Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g2854 ATGAAGAGAGATCGTCAAGAAACCTCTGGTGGAGGTGTGAGTAGCAACAATAACAATAGCGACAACATCATCAGCAACAACTTTGTTAGTGTACGAGGTGAATGTTCATCAATGCAGAACAACAACAACAACGGAAAACAAAGTTTGTGGAGCGAAGAAAAAGAGAACAGTGGTGGAATGGACGAGTTACTAGCGGCATTAGGTTACAAGGTTCGTTCTTCAGACATGCTTGACGTAGCTCAAAAGCTTGAACAACTTGAGATGGTGATGGGTAGTGCTCAAGAGGAAGGAATTAACCATCTTGCTTCAGATACAGTTCACTACGATCCCACCGATCTATATTCATGGGTTCAAACCATGCTCACTGAACTTAACCCTTCCACCGATTCACAAATCAATGACCCTTTAGATTCTTCTTCTTCCATCTTCAACGATAACTCGCAGTATGATCTCAGTGTTATTCCTGGAATGGCCGCATACCCACCTCAGAGCCATAACCAAAACAGCGAAAGTGAAGGTTCTAACAGCAACAAAAGGTTGAAGACGTGGGGGAGTGAAACGGAATCGGAAGATATTTTTCTGCCGGCGTTATCACCGCCGGCGGAGACTACAAGACCGGTGGTTCTCGTTGACTCACAGGAAACTGGGGTTCGTCTTATTCACACTATGATGGCTTGCGCCGATGCGATTCAGCGTGATGATATCAAGATTGCTGATAGACTCGTGAAGAATATTGGAATATTGGCTTCGTCGCAAACCGGAGCGATGGGAAAAGTTGCTTCGTATTTCGCACAAGCTCTGTATCGGAGAATCTGCAGAGTTTCCCCTGATGAAACTCTGGATTCATCTTTGTCTGATGCACTTCACATGCACTTTTACGAGTCTTCTCCTTATCTCAAATTCGCTCACTTCACCGCTAATCAAGCTATTCTGGAAGCTTTTGCCGGTGCCGGAAGTGTTCACGTCATTGATTTTGGTCTCAAACAAGGGATGCAGTGGCCGGCGCTTATGCAAGCACTTGCATTACGTCCTGGTGGTCCACCAACTTTCCGGTTAACCGGAATCGGACCACCGCAGACGGGTAACACCGATGCTTTGCAGCAGGTGGGTTGGAAATTGGCTCAGCTTGCTCAGACCATTGGTGTTCAGTTCGAATTTCGTGGATTCGTTTGCAACAGTCTCGCGGATCTTGACCCGAATATGCTCGAGATCCGACCCGGTGAAGCCGTTGCTGTTAACTCCGTTTTCGAACTTCACACCATGTTAGCCCGACCCGGTTCCATTGATAAGGTTCTCAACACTGTTAAGAAGATTAACCCTAAGATTGTCACTATCGTGGAGCAAGAAGCGAATCATAACGGACCGGTTTTCATGGATCGGTTCACGGAGGCTTTGCATTATTACTCGAGTTTATTTGATTCTCTGGAGGGTTCTTCTAATTCAAACCCGGCCGGGTCTGGTTCTTCGAGTCAGGATCTGTTGATGTCTGAGCTTTACTTGGGGAGACAGATATGCAACGTGGTGGCTTATGAAGGTGTGGACCGGGTCGAGAGACACGAGACACTGAGTCAGTGGAGGTCGAGGATGGGTTCAGCTGGGTTCGACCCGGTTCATTTAGGTTCAAACGCGTTTAAGCAAGCGAGTACTTTGTTGGCTTTGTTCGCCGGCGGGGATGGGTATAGGGTGGAGGAGAATAACGGGTGTCTTATGCTTGGGTGGCACACGAGGTCACTCATTGCTACCTCCGCGTGGAAGCTTCCACTCAGTGAGTCAAAGTGA 1779 0.4761 MKRDRQETSGGGVSSNNNNSDNIISNNFVSVRGECSSMQNNNNNGKQSLWSEEKENSGGMDELLAALGYKVRSSDMLDVAQKLEQLEMVMGSAQEEGINHLASDTVHYDPTDLYSWVQTMLTELNPSTDSQINDPLDSSSSIFNDNSQYDLSVIPGMAAYPPQSHNQNSESEGSNSNKRLKTWGSETESEDIFLPALSPPAETTRPVVLVDSQETGVRLIHTMMACADAIQRDDIKIADRLVKNIGILASSQTGAMGKVASYFAQALYRRICRVSPDETLDSSLSDALHMHFYESSPYLKFAHFTANQAILEAFAGAGSVHVIDFGLKQGMQWPALMQALALRPGGPPTFRLTGIGPPQTGNTDALQQVGWKLAQLAQTIGVQFEFRGFVCNSLADLDPNMLEIRPGEAVAVNSVFELHTMLARPGSIDKVLNTVKKINPKIVTIVEQEANHNGPVFMDRFTEALHYYSSLFDSLEGSSNSNPAGSGSSSQDLLMSELYLGRQICNVVAYEGVDRVERHETLSQWRSRMGSAGFDPVHLGSNAFKQASTLLALFAGGDGYRVEENNGCLMLGWHTRSLIATSAWKLPLSESK* 593
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g2854 592 Pfam GRAS domain family 219 585 IPR005202 -
Psa5g2854 592 Gene3D - 59 124 IPR038088 -
Psa5g2854 592 ProSiteProfiles GRAS family profile. 210 585 IPR005202 -
Psa5g2854 592 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 55 585 IPR005202 -
Psa5g2854 592 MobiDBLite consensus disorder prediction 156 182 - -
Psa5g2854 592 Pfam Transcriptional regulator DELLA protein N terminal 61 128 IPR021914 -
Psa5g2854 592 Coils Coil 76 96 - -
Psa5g2854 592 MobiDBLite consensus disorder prediction 8 54 - -
Psa5g2854 592 MobiDBLite consensus disorder prediction 1 55 - -
Psa5g2854 592 MobiDBLite consensus disorder prediction 161 182 - -
Psa5g2854 592 PANTHER DELLA PROTEIN RGL1 55 585 IPR030006 GO:0003712|GO:0005634
Psa5g2854 592 SMART DELLA_2 61 134 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g2854 Psa-Chr5 217060624 217063804 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g2854 46 586 GRAS Transcription Factor Family AT1G14920 60.909 0.0 670
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Psa5g2854 GRAS 6e-136 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g2854 K14494 - gmx:100799695 836.639