Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g2846 ATGTCTTCTTCCTTGGACATGTCACTTGATGATAGAATTAAGAACAGGACTAACAGAGGCAGAGGCAGAGGACGTGGCAAAGCCCTTTCTGGCCGTGGAAGTGGGACTCTAGGAGGTGGAAGAAGGACTGGTGCTGTTAATGGTAGAAGAATGACTGGTTCTGGTATCGGTGGAAGAGCAACTGGTGCTGTTCGTAGAGGCCCACTTATGGTCAACACTCGCCCATCATCTTATGCTATTGCCAAGTCTATTCGCAGAACCAAGCCTTTTCCATGGCAGAGTGATTTGCTTGAGGATAGTCTTAGAGCTGCTGGGATTCAAGGAGTAGAAGCTGAAACCAAGTTGTATGTTTCCAACTTGGACAGAGGAGTAACCAATGAAGACATAAGGGAGCTTTTCTCTGAGCTTGGAGACTTGAAGCGCTATGCTGTTCATTATGAGAAAAATGGACACCCAACTGGATCAGCTGAAGTGGTCTATAATAGAAGAAGTGATGCTTTTGCCGCTTTAAAACGATATAACAATGTACTTTTGGATGGAAAGCCCATGAAAATTGAGATTGTTGGAGCAAAATCAGAATTGCCTGTTACTGCACGTGTGAATGTCACTGGGATGAATGGACAGAGGAAGAGGACAGTTGTAATGACGCCTAGAGGTGGTCGAGGTGGAGGTCCTGCTGTGGTAAATCGTGGTGCTGCTTGGGGACGTCGAGGTGGCTCAAGGGGTGGTAGTGGCAGTGGACGTGGCCGTGGCCGAGGCCGTCCTGGTAGGGGTGGAGGTCGAGGACGTGGAAGAAAGGATGGAGTTGAAAAGTCAGCTGAGCAACTTGACAAGGAACTGGAGACCTATCATGCAGAGGCTATGAACATCTCATGA 876 0.4817 MSSSLDMSLDDRIKNRTNRGRGRGRGKALSGRGSGTLGGGRRTGAVNGRRMTGSGIGGRATGAVRRGPLMVNTRPSSYAIAKSIRRTKPFPWQSDLLEDSLRAAGIQGVEAETKLYVSNLDRGVTNEDIRELFSELGDLKRYAVHYEKNGHPTGSAEVVYNRRSDAFAALKRYNNVLLDGKPMKIEIVGAKSELPVTARVNVTGMNGQRKRTVVMTPRGGRGGGPAVVNRGAAWGRRGGSRGGSGSGRGRGRGRPGRGGGRGRGRKDGVEKSAEQLDKELETYHAEAMNIS* 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g2846 291 SMART rrm1_1 114 186 IPR000504 GO:0003723
Psa5g2846 291 SMART FoP_duplication_2 217 291 IPR025715 -
Psa5g2846 291 Coils Coil 266 291 - -
Psa5g2846 291 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 115 183 IPR000504 GO:0003723
Psa5g2846 291 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 113 190 IPR000504 GO:0003723
Psa5g2846 291 SUPERFAMILY RNA-binding domain, RBD 16 187 IPR035979 GO:0003676
Psa5g2846 291 MobiDBLite consensus disorder prediction 1 42 - -
Psa5g2846 291 CDD RRM_THOC4 113 187 - -
Psa5g2846 291 PANTHER RNA AND EXPORT FACTOR BINDING PROTEIN 1 290 - -
Psa5g2846 291 MobiDBLite consensus disorder prediction 260 284 - -
Psa5g2846 291 MobiDBLite consensus disorder prediction 219 291 - -
Psa5g2846 291 Gene3D - 106 190 IPR012677 -
Psa5g2846 291 Pfam C-terminal duplication domain of Friend of PRMT1 234 285 IPR025715 -
Psa5g2846 291 PANTHER THO COMPLEX SUBUNIT 4C 1 290 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g2846 Psa-Chr5 216276003 216280134 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g2846 115 193 Eukaryotic Initiation Factors Gene Family AT2G23350 36.709 1.75e-08 53.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g2846 K12881 - gmx:100820344 387.882