Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g2830 ATGGGAAGACAACCTTGTTGTGACAAAGTTGGTTTGAAAAAAGGACCATGGACAACAGAAGAAGATAAAAAGCTCATCAATTTCATCCTCACTAATGGCCAATGTTGCTGGAGAGCTGTCCCTAAGCTAGCAGGGTTGTTAAGGTGTGGAAAAAGTTGCAGGCTTAGATGGACAAATTACTTAAGGCCTGACCTAAAAAGAGGACTTTTATCAGATTATGAGGAGAAAATGGTCATTGATCTTCATGCTCAACTTGGCAACAGATGGTCAAAAATTGCTTCTCATCTACCTGGAAGAACTGATAATGAGATTAAGAATCATTGGAATACACATATCAAGAAAAAGCTTAAGAAAATGGGAATTGATCCGGTTACACATAAGATATTATTCACTAATGAAATAGAGCAAACTCAAACAAAATCTGAACAACCTCAACAAGAATCTTCCTCTATTGAACATGACACAAACGTTGTTGACTCCGACAATGACAAAAACAAAGAGCCACAAAAACCAGAAACTTCATTTGGCTCATCAACAATAACTGAAGAACATGACCAAATTATGACACCACTTTTTGACTCATTGGAACTAATGGATGAGTTCTTAACAGAAGAAATTCCAAGTCTAGTTCCATGTGTTCCTTCATCTTCATCAACTACAACTATAACTACAACATCATCATCATCTTCTTCAAATTCATCTAACTTTCTTGAAGACTTGTTACTACCTGATTTTGATTGGTCACATGATAATTATAATATTGAAAATAGTGATAATAGTAATAATGATATTAATATGGAATTATGGGATTATGACTTTATTAGAAGTTGGGATTTTGTGATTAATGATGATGATAATGGTGACAGAAAGCAAGTATTTGATGCTCCTCAAAATCAGTATCCAAGAGTGGTCATGGATTCAGAATCATGGGCCTATGGATTGTTTTGA 948 0.3481 MGRQPCCDKVGLKKGPWTTEEDKKLINFILTNGQCCWRAVPKLAGLLRCGKSCRLRWTNYLRPDLKRGLLSDYEEKMVIDLHAQLGNRWSKIASHLPGRTDNEIKNHWNTHIKKKLKKMGIDPVTHKILFTNEIEQTQTKSEQPQQESSSIEHDTNVVDSDNDKNKEPQKPETSFGSSTITEEHDQIMTPLFDSLELMDEFLTEEIPSLVPCVPSSSSTTTITTTSSSSSSNSSNFLEDLLLPDFDWSHDNYNIENSDNSNNDINMELWDYDFIRSWDFVINDDDNGDRKQVFDAPQNQYPRVVMDSESWAYGLF* 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g2830 315 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Psa5g2830 315 PANTHER MYB TRANSCRIPTION FACTOR 1 288 - -
Psa5g2830 315 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Psa5g2830 315 SMART sant 66 114 IPR001005 -
Psa5g2830 315 SMART sant 13 63 IPR001005 -
Psa5g2830 315 CDD SANT 16 61 IPR001005 -
Psa5g2830 315 PANTHER TRANSCRIPTION FACTOR MYB51-LIKE ISOFORM X1 1 288 - -
Psa5g2830 315 MobiDBLite consensus disorder prediction 135 153 - -
Psa5g2830 315 MobiDBLite consensus disorder prediction 135 183 - -
Psa5g2830 315 Gene3D - 70 157 - -
Psa5g2830 315 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Psa5g2830 315 Pfam Myb-like DNA-binding domain 74 111 IPR001005 -
Psa5g2830 315 Gene3D - 11 67 - -
Psa5g2830 315 MobiDBLite consensus disorder prediction 154 170 - -
Psa5g2830 315 CDD SANT 74 112 IPR001005 -
Psa5g2830 315 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Psa5g2830 315 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Psa5g2830 315 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g2830 Psa-Chr5 214426500 214428852 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g2830 1 284 MYB Transcription Factor Family AT1G66230 55.853 2.32e-93 277
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Psa5g2830 Myb_DNA-binding 9e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g2830 K09422 - gmx:100803624 447.203