Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g2823 ATGTCTTTGAGTCCTCCAAGAGAGAGAATCAACGGCCAACATAGGAACTTCCATCTCTACTGGTGCTTCCAATGCAACCGCTCCGTCCGCGTCGCATCCGATAACTCCACAGAATTAATATGCCCACGCTGCTTCGGTCAATTCATATGCGAAATCACCATACCAAGACCGAGACTCATGATAGACTTCACCGCACACGATCCTTCCCCAGAAGCGCGTTTGCTAGAAGCACTTTCCCTCATCATCGACCCACCCACCCGAACACCACGCCCACGAGAAGTTCCCGTGCACCGCCGCACAGGGGATCATCCGACCCGAACACAACCCGAGCCCGGAATCCAACATCATCCACGTACATGGGTTATCCTTCAACCCGTGGATCCTTCAGATTCAAACACGTTTCAACCCATGATTAATCCACGTGGACGACAGGGATCAATACCGATTCCGCGTGGCGTTGATGCAGGAGATTACTTTTTCGGCCCCGGTTTTAACGAACTGGTAGACCAAATAACTGAAAACGACCGGCAAGGTCCGCCGCCGGTGCCGGAGAGAGGCATAAACGCGATTCCGACGGTGAAAATCGAGAGTAAGAATCTGAAAGAGAATTCTCATTGTCCTGTTTGTCAGGAAGAGTTTGAAATTGGCGGTGAAGCGAGGGAACTTCCATGTAAACATATATATCACTCTGATTGCATTGTTCCGTGGCTTAGACTTCATAATTCTTGTCCAATTTGTCGTCAAGAGGTTCCTGTAGGTTCTGATGATGAGTGTAGTGAAGAAGAAGGTGGTGGAGGTAGGTTACGAAGGTGCTTGAGGTGGACTCGTGTTTCGTCTCTTTGGCCTTTTCATGGAAGAATCTAA 864 0.4942 MSLSPPRERINGQHRNFHLYWCFQCNRSVRVASDNSTELICPRCFGQFICEITIPRPRLMIDFTAHDPSPEARLLEALSLIIDPPTRTPRPREVPVHRRTGDHPTRTQPEPGIQHHPRTWVILQPVDPSDSNTFQPMINPRGRQGSIPIPRGVDAGDYFFGPGFNELVDQITENDRQGPPPVPERGINAIPTVKIESKNLKENSHCPVCQEEFEIGGEARELPCKHIYHSDCIVPWLRLHNSCPICRQEVPVGSDDECSEEEGGGGRLRRCLRWTRVSSLWPFHGRI* 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g2823 287 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 9 263 - -
Psa5g2823 287 PANTHER - 9 263 - -
Psa5g2823 287 MobiDBLite consensus disorder prediction 90 105 - -
Psa5g2823 287 Pfam zinc-ribbon 20 52 IPR039525 GO:0061630
Psa5g2823 287 MobiDBLite consensus disorder prediction 90 111 - -
Psa5g2823 287 Pfam Ring finger domain 205 247 IPR001841 -
Psa5g2823 287 SMART ring_2 206 246 IPR001841 -
Psa5g2823 287 CDD RING-H2_RNF126_like 206 247 - -
Psa5g2823 287 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 168 253 IPR013083 -
Psa5g2823 287 ProSiteProfiles Zinc finger RING-type profile. 206 247 IPR001841 -
Psa5g2823 287 SUPERFAMILY RING/U-box 187 252 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g2823 Psa-Chr5 213848515 213850529 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g2823 178 287 C3H Transcription Factor Family AT1G68180 47.788 1.03e-27 105
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g2823 K11982 - gmx:100787399 357.066
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa5g2823 5 213848515 213850529 Psa5g2823 5 213848515 213850529 ECH