Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g2811 ATGACGACACGTATAGCACCGGGCGTCGGTGCAAATTTACTCGGCCAACACTCAGCCGAGAGAAACCAAGACGCTACTGCCTATGTAGGCAATCTCGACCCTCAGATATCAGAGGAATTATTATGGGAGCTTTTTGTTCAAGCTGGTCCTGTAGTTAATGTCTATGTTCCCAAGGATAGAGTTACTAACCAGCATCAAGGTTATGGATTTGTTGAATTCCGGAGTGAAGAAGATGCTGACTATGCTATCAAAGTACTTAACATGATTAAACTTTATGGAAAACCAATTCGTGTAAATAAGGCATCCCAAGATAAAAAAAGCTTGGATGTCGGGGCAAACCTTTTCATTGGCAATCTGGATCCTGATGTAGATGAGAAGCTCTTGTATGATACCTTCAGTGCTTTTGGAGTTATTGTTACGAATCCAAAGATCATGAGAGATCCCGACACAGGGAATTCCCGAGGCTTTGGCTTCATAAGCTATGATTCATTTGAGGCATCTGATTCAGCTATTGAGGCAATGAATGGACAGTATCTTTGCAATCGTCAAATTACAGTGTCATATGCTTATAAGAAAGACACTAAAGGTGAAAGGCACGGTACTCCTGCAGAAAGAGTTTTGGCTGCAAGTAATCCAACTGCACAAAAGAGCAGGCCCCATACTTTATTTGCCAGTGGGCCACCAACACTTCCCAATGCTCCTCAAGCTAACGGTACCATTCCTGCTCCAGTGCCACCCCGCCCCTTCGCTAATGGCGTTGCCCCACCTCCTATTCCTGTCATCCACCCACCACCTCCTCAAGCCGCAGCCTTTCAGCCTATGCAGATGCCACCACCTGGACAACAAGTATGGCATCAACAGCAGCAAGGCCAACCAATGATGCAACATGGAATGCCTCCTCCTCCAATGCAGCATTTCAGACCACCTCACTCAATGCAGATGCCACCGCCACCACCTCCGCAAGGTATTCAGGGACCTCCAAGGCCTCTTCCACCACCTTCAGTAATGGCAGGCCAACAACAATCTGTTTGGAGACCACCACCACCACCTCAGCAACAGGGTGGACATCCTATGGGATATCCTCAGTCCTCAATGCCACCACCACCACCTCCCAATCACCATGGAATGCGACCACCTTCAGGTTAA 1146 0.4764 MTTRIAPGVGANLLGQHSAERNQDATAYVGNLDPQISEELLWELFVQAGPVVNVYVPKDRVTNQHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDSAIEAMNGQYLCNRQITVSYAYKKDTKGERHGTPAERVLAASNPTAQKSRPHTLFASGPPTLPNAPQANGTIPAPVPPRPFANGVAPPPIPVIHPPPPQAAAFQPMQMPPPGQQVWHQQQQGQPMMQHGMPPPPMQHFRPPHSMQMPPPPPPQGIQGPPRPLPPPSVMAGQQQSVWRPPPPPQQQGGHPMGYPQSSMPPPPPPNHHGMRPPSG* 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g2811 381 CDD RRM2_SF3B4 111 193 IPR034159 -
Psa5g2811 381 CDD RRM1_SF3B4 28 100 IPR034158 -
Psa5g2811 381 MobiDBLite consensus disorder prediction 313 334 - -
Psa5g2811 381 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 112 191 IPR000504 GO:0003723
Psa5g2811 381 SUPERFAMILY RNA-binding domain, RBD 25 195 IPR035979 GO:0003676
Psa5g2811 381 MobiDBLite consensus disorder prediction 193 218 - -
Psa5g2811 381 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 28 97 IPR000504 GO:0003723
Psa5g2811 381 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 114 184 IPR000504 GO:0003723
Psa5g2811 381 MobiDBLite consensus disorder prediction 343 381 - -
Psa5g2811 381 Gene3D - 16 110 IPR012677 -
Psa5g2811 381 SMART rrm1_1 26 99 IPR000504 GO:0003723
Psa5g2811 381 SMART rrm1_1 113 187 IPR000504 GO:0003723
Psa5g2811 381 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 25 103 IPR000504 GO:0003723
Psa5g2811 381 MobiDBLite consensus disorder prediction 313 381 - -
Psa5g2811 381 PANTHER TRANSFORMER-2-RELATED 1 362 - -
Psa5g2811 381 PANTHER SPLICING FACTOR 3B SUBUNIT 4 1 362 - -
Psa5g2811 381 Gene3D - 111 200 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g2811 Psa-Chr5 212704865 212711923 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g2811 16 98 Eukaryotic Initiation Factors Gene Family AT4G34110 36.145 3.52e-06 47.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g2811 K12831 - gmx:100792707 508.064