Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g2810 ATGTCTGATAGCAAACGAGAGAAGCTAGCCGGTTTGTCACTTGATGACATATTAGCCAATCAAAAAAGACCCGGGACCGGTTTAACTCCAACTCCGCCAACCCAACCTTCCCCTCAAAGCCGAACCCTCTTTGACATCATCAGAGAAGACCAAACCAACAAAAAAGATAAAAGATCTTGGAAAGCCTTTAAAGACAAGCTACGGCTGAAGCGCGCAGGCTCCGCTTGGACATCATCAATTCACATTCCAACATCAGACATTCCCATCCAAAATCCAAACAGCAGAACCTTTTCCCAACTCGGTCGTCACGACTCAGTCCGAATTCAATCTCACCACGACTCGGACATGACAACAACTCATCAAGTGGACGACCTCGTTCCGCCAGATGAACCCAACGCTCCATTTTCCAAACCACAATTCAGTCGCAAGAGTTCAACTCGTTTCACGCCAGACTCCCCTGAGAATCCCATCAGCGGGGGAGGACTCCGACCACAACTTTCACGTAAGAATTCCGTCAACATGCCATCGTCGGAGCCCTTTCGAAAAGGCCGTGTGGTGACTTTTCGAGACAGCTTCGATGATGACGATGACGATGAAAATGAAACCAAGAAGCCGGGGAGGGCATTATCAGCTAGAGAGGCTGTGGCGGCTCAGGAAGCGGCAGAAGCTGCTTCGGAGGAACAAGAGGAGGGTGAGACAGGACAGCCTATGATGTCGTTGATGGATTTGTTAGAGGAGACTGATAGAGAAATGGGGTTGGAAGGGTCAAGGTATGTATTAAGTGACGATGAAGATTTTTATGATGATGATGATGAAGAAGATGAAGATGATGACAATGAAGGAAGTGCTTTGGAACAAAGTTGTTGTATTTGCATGGTGAAGCATAAGGGTTCTGCTATGGCAGCTTGTGGCCATAGTTTCTGTAGGATGTGTTCAAGGGAGCTTATGGTTGCCAAGGGAAATTGTCCACTTTGTAATAATTTCCTTACAGAGATTCTTGATATTTTTTAA 1011 0.4649 MSDSKREKLAGLSLDDILANQKRPGTGLTPTPPTQPSPQSRTLFDIIREDQTNKKDKRSWKAFKDKLRLKRAGSAWTSSIHIPTSDIPIQNPNSRTFSQLGRHDSVRIQSHHDSDMTTTHQVDDLVPPDEPNAPFSKPQFSRKSSTRFTPDSPENPISGGGLRPQLSRKNSVNMPSSEPFRKGRVVTFRDSFDDDDDDENETKKPGRALSAREAVAAQEAAEAASEEQEEGETGQPMMSLMDLLEETDREMGLEGSRYVLSDDEDFYDDDDEEDEDDDNEGSALEQSCCICMVKHKGSAMAACGHSFCRMCSRELMVAKGNCPLCNNFLTEILDIF* 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g2810 336 PANTHER OS01G0917900 PROTEIN 3 336 - -
Psa5g2810 336 SUPERFAMILY RING/U-box 287 332 - -
Psa5g2810 336 MobiDBLite consensus disorder prediction 263 280 - -
Psa5g2810 336 ProSiteProfiles Zinc finger RING-type profile. 288 326 IPR001841 -
Psa5g2810 336 CDD RING-HC 288 325 - -
Psa5g2810 336 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 263 336 IPR013083 -
Psa5g2810 336 SMART ring_2 288 325 IPR001841 -
Psa5g2810 336 Pfam Zinc finger, C3HC4 type (RING finger) 285 327 - -
Psa5g2810 336 PANTHER OS01G0917900 PROTEIN 3 336 - -
Psa5g2810 336 MobiDBLite consensus disorder prediction 1 41 - -
Psa5g2810 336 MobiDBLite consensus disorder prediction 134 236 - -
Psa5g2810 336 MobiDBLite consensus disorder prediction 137 153 - -
Psa5g2810 336 MobiDBLite consensus disorder prediction 255 280 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g2810 Psa-Chr5 212701844 212703956 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g2810 4 336 C3H Transcription Factor Family AT3G07120 36.885 1.14e-54 181
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g2810 - - gmx:100795449 353.214