Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g2792 ATGAAACCGATTTTCGATCTTGAAGTAGAGGCCGTCACAGAATATGAATCTGAAGTAAGTAGCCATGTTGCTTCCAGTATATCCATCCATGGATTCGAAACCTCTCCAGGTTCCTATAGTAACAGCTTCACCAATAATTCAAACATTACAAATCCAAGAGAGTTCCGTCCCTATTCAAATCCAATCTCACTCGACTTAACACTCAATTTCAACAACAACAACGACTTGGTTCCGAGAGATTCAACAGGATTCTCATTCTCAAGTACTACCAGTGAGAGCAGCAATGAACCTACCATCATCCCGAGAGTTTTCTCTTGCAATTACTGTCACCGCAAGTTTTACAGCTCTCAGGCACTCGGTGGACACCAAAACGCACACAAAAGAGAAAGAATTATAGCAAAGCGAGCTTTGCGAATGGGAGTATTCTCTGAGAGGTATGCAAGTTTAGCATCGCTCCCTCTCAATGGTTCTTTCAGGTCCTTAGGTATAAAATCACACTCTTCACTACACCATGCTTTTTTGCCACCAACAATAAGGCCTAGTCCCGAGATAAAAAGTAACGCGAGATTCAAACAAGGATGTATCGGTCATCCGATATTCTTGGAGGATGATGAGACAGAACTTTTGTGGCAAGGTAGTTTCCATCAGGTTACTGAGGGAGGTAGTAATAATGCTCATCAGAGGTCAAATCTGTGTTTTACTGAAGTGAATGTAAAACCATTGGTTGATAATATAGAGAATTCAGCACCTGAATTAACATTGAAACTTTGA 771 0.4099 MKPIFDLEVEAVTEYESEVSSHVASSISIHGFETSPGSYSNSFTNNSNITNPREFRPYSNPISLDLTLNFNNNNDLVPRDSTGFSFSSTTSESSNEPTIIPRVFSCNYCHRKFYSSQALGGHQNAHKRERIIAKRALRMGVFSERYASLASLPLNGSFRSLGIKSHSSLHHAFLPPTIRPSPEIKSNARFKQGCIGHPIFLEDDETELLWQGSFHQVTEGGSNNAHQRSNLCFTEVNVKPLVDNIENSAPELTLKL* 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g2792 256 PANTHER ZINC FINGER PROTEIN JAGGED 1 256 IPR045320 GO:0003700
Psa5g2792 256 SUPERFAMILY beta-beta-alpha zinc fingers 102 131 IPR036236 -
Psa5g2792 256 ProSitePatterns Zinc finger C2H2 type domain signature. 106 126 IPR013087 -
Psa5g2792 256 Gene3D Classic Zinc Finger 84 148 - -
Psa5g2792 256 PANTHER ZINC FINGER PROTEIN 3-RELATED 1 256 - -
Psa5g2792 256 ProSiteProfiles Zinc finger C2H2 type domain profile. 104 131 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g2792 Psa-Chr5 211581953 211585954 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g2792 97 256 C2H2 Transcription Factor Family AT1G66140 48.947 2.77e-46 153
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Psa5g2792 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g2792 - - mtr:MTR_3g065020 335.495