Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g2791 ATGGTTTTGTCATGGACAAGAAGAACCGTTTTCCGCCGTGCTCACAAGGCAAAGGAACATCTTCCCGGCGTTGATTTAACCGTGGAGGAGATAACAACCCCGGCTCATTTCCGGTGTCCGGTGAGTCTAGACTTGATGAAAGATCCGGTGACTCTATCAACCGGAATCACCTACGACAGAGGAAGCATCGAGAAATGGATTGAGTCTGGAAACAAAACATGTCCGGTTACTAATCAGAAGCTTACGACTTTTGAGATCACACCGAATCACACCATAAGAAAAATGATTCAGAGCTGGTGCGTTGAAAATAGTTCTTATGGGATTGAGAGAATTCCGACTCCTCGTATACCGGTCTCTAGCTACGAGGCTTCCGAGGTTTGTACGAGGTTGTTGTCTGCTTCTAAAAGTTTGGATGAGAAAAAGTGTGTGGAGTTTGTCGGAAAGATTAAGGTTTGGTGGAGAGAGAGTGAGAGGAATAAGAGGGTTATAATTGGAAATGGAGCTTGTGCTGTTCTTGCAACGGTTTTTGATTCTTTTTCAAGTGTTTCTATTGAGAATCATGTTGTTGTTTTGGAAGAGATTTTGGAGATTTTAACATGGATGGTTGTTCTAACCTCTTTTGGCGAAACGAAATCAAAGCTGTGTTCATCTTCATCTTCTTTAGGTTGCTTGGTTTGGTTTCTAGATGGTAAAGATTTAGGAGCAAGACAAAATGCTGTTTTGTTGCTTAAGGAAATGAATGTTGAGGAGTTATCAAAAGTTGAAGGTGTTGTTGAAGGTTTGGTTAAGATTATCAAGGAACCAATTGGGTCTAGTGCTACAAAAGCATGTTTGACCACAATTTTCAAGATGGTTTCATCGCCTAAAAATAGAGTTGAAGTTGGTGAAAAGTTTGTTGAATTGGGTTTGGTTTCATTTTTGCTTGAATCAATAGTTGATGGAGAGAAAGGGGTGTGTGAGAAAGCACTTGGTGTGTTGGATTGTTTATGTGATTGCCAAAAAGGGAAAGAGGTTGTGAAAATGAATGCTTTAGCTTTACCTCTTGTGATTAAGAAAATTTTGAGGGTTTCTCCTTTAGCTTCTAGTTTTGCTGTTGGTGTTGTTAGGAAGATGTGTGAGAAGAAGGAAGAAGGAGTTTTGATTGAGGTGATTCAACTTGGTGGTTTTCAGAAACTATTGGTTATGTTGCAAGTTGGGTGTGAGGAGAAGACAAAGGAGAATGTTACTGAGTTGTTGAAGATGTTGAATGGTTATAGAAGCAAAGCAGAATGTGTTGAGTCTTCGTTAGAGTTCAAGTATCTTAAGAACTAA 1311 0.3974 MVLSWTRRTVFRRAHKAKEHLPGVDLTVEEITTPAHFRCPVSLDLMKDPVTLSTGITYDRGSIEKWIESGNKTCPVTNQKLTTFEITPNHTIRKMIQSWCVENSSYGIERIPTPRIPVSSYEASEVCTRLLSASKSLDEKKCVEFVGKIKVWWRESERNKRVIIGNGACAVLATVFDSFSSVSIENHVVVLEEILEILTWMVVLTSFGETKSKLCSSSSSLGCLVWFLDGKDLGARQNAVLLLKEMNVEELSKVEGVVEGLVKIIKEPIGSSATKACLTTIFKMVSSPKNRVEVGEKFVELGLVSFLLESIVDGEKGVCEKALGVLDCLCDCQKGKEVVKMNALALPLVIKKILRVSPLASSFAVGVVRKMCEKKEEGVLIEVIQLGGFQKLLVMLQVGCEEKTKENVTELLKMLNGYRSKAECVESSLEFKYLKN* 437
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g2791 436 PANTHER WDSAM1 PROTEIN 14 436 IPR045185 GO:0061630
Psa5g2791 436 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 21 14 436 - -
Psa5g2791 436 SUPERFAMILY RING/U-box 29 109 - -
Psa5g2791 436 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 15 110 IPR013083 -
Psa5g2791 436 CDD RING-Ubox_PUB 37 79 IPR045210 -
Psa5g2791 436 Gene3D - 115 431 IPR011989 -
Psa5g2791 436 SMART Ubox_2 36 99 IPR003613 GO:0004842|GO:0016567
Psa5g2791 436 ProSiteProfiles U-box domain profile. 32 106 IPR003613 GO:0004842|GO:0016567
Psa5g2791 436 SUPERFAMILY ARM repeat 138 415 IPR016024 -
Psa5g2791 436 Pfam U-box domain 34 104 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g2791 Psa-Chr5 211423939 211426410 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g2791 30 435 U-box Gene Family AT5G37490 46.489 6.83e-114 339
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g2791 - - gmx:548086 602.438