Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g2790 ATGACTAGAAAGAAGGTGAAACTAGCCTATATAGTCAACGACTCAGCGAGGAAGGCGACATTCAAGAAAAGGAAGAAAGGTCTAATGAAAAAGGTTAGTGAGCTTAGTACCCTTTGCGGAATTGATGCTTGTGCTATAATTTACAGCCCTTACGAATCTCAACCCGAGGTTTGGCCATCATCAATAGGAGTCCAAAGGGTGCTTTCAAAGTTCCGAAGAATGCCAGAATTGGAACAAAGCAAAAAGATGGTGAATCAAGAGAGTTTTTTGAGGCAGAGGATTCAAAAGGTGAAAGATCAATTAACAAAACAAAGAAAAGATAATCGAGAAAAAGAAATGACTCAATTAATGTTTCAATATCTTGGTGATGATAAAACTATGCAAAATATAAGTATGCTTGATTTGAACGATATGGCATGGTTGATTGATCAATATTTGAAAGATATTAATAGAAGGGTTGGAATGTTGAGTAAGAATGGTCAAGGTCAATCTCAAATGGTAGCACCAACAATGGTGACTAATGGTGTGGCTAAGATTGAAGATAGTGGACAAGGGAGTTATGGTAGTCATGTTTTGGATATGAATATGGATGTTATGCAAAACCATCATTGGTTTATGAATTTGATGAATAATAGTGTTGGTGATGAGGCACCACCTCCTTTGGGAGATGTTAATCAACAAAATGGATTTTGGCCAAATCCATTTTTTCATTGA 714 0.3641 MTRKKVKLAYIVNDSARKATFKKRKKGLMKKVSELSTLCGIDACAIIYSPYESQPEVWPSSIGVQRVLSKFRRMPELEQSKKMVNQESFLRQRIQKVKDQLTKQRKDNREKEMTQLMFQYLGDDKTMQNISMLDLNDMAWLIDQYLKDINRRVGMLSKNGQGQSQMVAPTMVTNGVAKIEDSGQGSYGSHVLDMNMDVMQNHHWFMNLMNNSVGDEAPPPLGDVNQQNGFWPNPFFH* 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g2790 237 PANTHER MADS BOX PROTEIN 2 167 - -
Psa5g2790 237 ProSiteProfiles MADS-box domain profile. 1 49 IPR002100 GO:0003677|GO:0046983
Psa5g2790 237 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Psa5g2790 237 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Psa5g2790 237 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Psa5g2790 237 PANTHER MADS-BOX TRANSCRIPTION FACTOR FAMILY PROTEIN 2 167 - -
Psa5g2790 237 SUPERFAMILY SRF-like 1 85 IPR036879 GO:0003677|GO:0046983
Psa5g2790 237 Coils Coil 91 114 - -
Psa5g2790 237 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Psa5g2790 237 CDD MADS_SRF_like 2 85 IPR033897 GO:0000981|GO:0000987|GO:0045944
Psa5g2790 237 Gene3D - 13 95 IPR036879 GO:0003677|GO:0046983
Psa5g2790 237 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 51 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g2790 Psa-Chr5 211423027 211423889 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g2790 1 168 Type I MADS-box Gene Family AT5G48670 64.706 3.65e-68 211
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Psa5g2790 SRF-TF 2e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g2790 - - gmx:100813231 369.777