Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g2763 ATGAGTTCTCCTATGGAGACGGAGCAAAACCCTCCAACCGATCAAAACGGCGCCGCTTCCCAACACTCACCTCCACCTCCTCTCCCACCGGAGGACAAAGTTCTTGTGCCCATCGAGGTTTGCTTAAAACCTTCAAGTACAGTTTCCATTCACGATGTCCGTTCAGCCATTGAGGGGATGCTTGAAAAGAGGAGTTTGAGCTATAATGGCGGACCAATTCCTGTTCCCCTCGACGAGCCCTTTCTTGCTGATAATGTGCAAAGAATTTGCGTTTGTGATGCAGGTGAAGGGATGCAAAATGATAATGTTCTTTTGTTCTGGCAAGTCAAGCCGGTTGTACATGTCTTTCAGCTTAGCGAGGAAGGACCCTGTGAGGATATCAGCTCTGATGGCCAGTCTTCTAGCTTCAATGAATGGATTCTTCCTGCAAAAGAATTTGATGGCATGTGGGAAAGCCTGATATATGAATCTGGTCTAAAGCAAAGGTTGTTGCGGTATGCAGCGAGTGCTTTGCTCTTCACGGAAAAGGCTGTTGATCCGTTCCTTGTTTCATGGAACCGCATAATTCTTTTGCATGGACCCCCTGGAACTGGAAAGACGTCTTTATGTAAAGCATTAGCTCAGAAGCTATCAATTCGATTCAATTCGAGATACACACAGGCCCAGCTTGTTGAAGTGAATGCACATTCTTTGTTCAGTAAATGGTTCTCTGAAAGCGGCAAGCTGGTAGCAAAGCTTTTCCAAAAGATTCAAGAAATGGTAGAGGAAGAAAGCAATCTGGTATTTGTTTTGATTGATGAAGTCGAAAGCCTCGCTGCTGCTAGAAAAGCTGCTTTGTCTGGTTCTGAACCTTCAGATTCTATTCGGGTTGTCAATGCATTATTAACTCAGATGGATAAGCTTAAATCATCTCCAAATGTGATAATTCTAACCACATCCAACATTACCGCTGCTATCGATATTGCTTTTGTTGACCGAGCTGATATCAAAGCATATGTTGGTCCACCAACTCTTCAAGCTCGATATGAAATATTAAGGTCTTGCTTGCAGGAACTCATGCGTACAGGGATATTAACTAGTTTTGAGGACTGTAAGAATACCGTACTTCCAAATTATGCTAGTGCAAAACAAAGGATGAATGCACCCAATTTTCATGAGGCTACTACATCCATGCAACTGTGCAAGCAACTAGTTGAAACTGCAGAGGCATGCGAGGGAATGAGTGGAAGGTCTCTCAGAAAGCTTCCATTTTTGGCACATGCTGCACTTGCAAATCCTTTTGATTGCAACCCTATCAAGTTCTTAAGTTCAATGGTAGATACAGCAAAGAGGGAACGTTCTGAGCTTCCCGATTAA 1356 0.4358 MSSPMETEQNPPTDQNGAASQHSPPPPLPPEDKVLVPIEVCLKPSSTVSIHDVRSAIEGMLEKRSLSYNGGPIPVPLDEPFLADNVQRICVCDAGEGMQNDNVLLFWQVKPVVHVFQLSEEGPCEDISSDGQSSSFNEWILPAKEFDGMWESLIYESGLKQRLLRYAASALLFTEKAVDPFLVSWNRIILLHGPPGTGKTSLCKALAQKLSIRFNSRYTQAQLVEVNAHSLFSKWFSESGKLVAKLFQKIQEMVEEESNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLKSSPNVIILTTSNITAAIDIAFVDRADIKAYVGPPTLQARYEILRSCLQELMRTGILTSFEDCKNTVLPNYASAKQRMNAPNFHEATTSMQLCKQLVETAEACEGMSGRSLRKLPFLAHAALANPFDCNPIKFLSSMVDTAKRERSELPD* 452
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g2763 451 MobiDBLite consensus disorder prediction 1 30 - -
Psa5g2763 451 PANTHER PACHYTENE CHECKPOINT PROTEIN 2 29 448 IPR044539 -
Psa5g2763 451 MobiDBLite consensus disorder prediction 1 21 - -
Psa5g2763 451 CDD AAA 187 335 - -
Psa5g2763 451 Pfam ATPase family associated with various cellular activities (AAA) 189 334 IPR003959 GO:0005524|GO:0016887
Psa5g2763 451 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 189 207 IPR001270 GO:0005524
Psa5g2763 451 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 303 317 IPR001270 GO:0005524
Psa5g2763 451 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 141 419 IPR027417 -
Psa5g2763 451 ProSitePatterns AAA-protein family signature. 307 326 IPR003960 GO:0005524|GO:0016887
Psa5g2763 451 SMART AAA_5 185 337 IPR003593 -
Psa5g2763 451 Gene3D - 128 352 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g2763 Psa-Chr5 209677959 209686395 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g2763 189 355 Calmodulin-binding Proteins AT3G56690 28.994 4.68e-13 69.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g2763 K22399 - gmx:100795009 786.178