Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g2758 ATGTCTGTAACTTCCACCACTCCCCTCTTCAAATCCCTAACCATAGCCGCACTCTTCCACAACAAAACCAAACCTACCTCCTTCTCACTTCCCTCCAAACCCTTCAAATTCCATATCTCCCTCAACTCTTCACCCTCTCTCACTCTCTCCCTCAAAACCAACCGCGCTACACCTTTGTTCGCCGCGCAAGAAGGTGAAACCCTAACCACAGAAGAAGGTGTCGTTGAAACCGAAGGACTTATCGATTGGGAACCCGAAGCTGCTGAAAACGAGACTGGCGGTGAAGACTATGCGGGAGGAGATTTTGCGGAACCATCCGAAGATGCGAAGTTGTTCGTTGGTAATTTGCCTTATGATGTTGATAGTGAGAAACTCGCCATGCTTTTTGAGCCAGCTGGAACTGTAGAGATTGCTGAGGTTATTTATAACAGGGAAACTGACCAGAGTCGCGGCTTTGGATTTGTAACCATGAGTACCGTTGAAGAAGCTGAAGCTGGTGCGGCGAAATTCAATCGCTATGATTATAATGGAAGACCCTTGACTGTGAATAAGGCTGCTCCAAGAGGATCTAGGCCAGAGCGGGAAGAGCGCCCACCTCGTACCTTTGAACCTGTCTTAAGAGTTTATGTTGGTAACTTATCATGGGAACTTGATGATAGTAGACTTGAGCAAGTTTTCAGTGAACATGGTAAGGTTGTGAGTGCTCGAGTAGTCTATGATAGAGAGACTGGTCGATCACGTGGCTTTGGCTTTGTCACAATGTCTGATGAGAAAGAAATGAATGATGCCATTGCCGCTCTTGATGGCCAGATTTTGGAGGGGAGGACAATAAAAGTAAGTGTTGCTGAAGACAGGCCCAGGCGTGGCTCCTTTTAA 876 0.4703 MSVTSTTPLFKSLTIAALFHNKTKPTSFSLPSKPFKFHISLNSSPSLTLSLKTNRATPLFAAQEGETLTTEEGVVETEGLIDWEPEAAENETGGEDYAGGDFAEPSEDAKLFVGNLPYDVDSEKLAMLFEPAGTVEIAEVIYNRETDQSRGFGFVTMSTVEEAEAGAAKFNRYDYNGRPLTVNKAAPRGSRPEREERPPRTFEPVLRVYVGNLSWELDDSRLEQVFSEHGKVVSARVVYDRETGRSRGFGFVTMSDEKEMNDAIAALDGQILEGRTIKVSVAEDRPRRGSF* 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g2758 291 SUPERFAMILY RNA-binding domain, RBD 199 289 IPR035979 GO:0003676
Psa5g2758 291 SUPERFAMILY RNA-binding domain, RBD 106 197 IPR035979 GO:0003676
Psa5g2758 291 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 111 180 IPR000504 GO:0003723
Psa5g2758 291 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 208 278 IPR000504 GO:0003723
Psa5g2758 291 Gene3D - 63 193 IPR012677 -
Psa5g2758 291 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 109 187 IPR000504 GO:0003723
Psa5g2758 291 PANTHER RIBONUCLEOPROTEIN 9 73 - -
Psa5g2758 291 PANTHER RIBONUCLEOPROTEIN 94 291 - -
Psa5g2758 291 SMART rrm1_1 207 280 IPR000504 GO:0003723
Psa5g2758 291 SMART rrm1_1 110 183 IPR000504 GO:0003723
Psa5g2758 291 CDD RRM_HP0827_like 110 187 - -
Psa5g2758 291 PANTHER OS02G0815200 PROTEIN 94 291 - -
Psa5g2758 291 PANTHER OS02G0815200 PROTEIN 9 73 - -
Psa5g2758 291 CDD RRM_HP0827_like 207 283 - -
Psa5g2758 291 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 206 284 IPR000504 GO:0003723
Psa5g2758 291 Gene3D - 194 291 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g2758 Psa-Chr5 209280477 209283046 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g2758 107 288 Eukaryotic Initiation Factors Gene Family AT3G16380 34.021 2.04e-21 92.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g2758 - - gmx:100810381 330.102
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa5g2758 5 209280477 209283046 Psa5g2758 5 209280477 209283046 ECH