Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g2757 ATGGAACCAGGCCAAATGGAAGAAACAGGAAAACTCATCGCTCTATCATACGAAGAAGATGACAGTGAAATCGATATCCAATCCGAAATTACATATGCCAAAAAATGTGCCGAACTAGAATTTTCTGAACTCACCGAAGAAGAAGAAGCGGAATTGCTTGTTGGTAATTTGCCTTTAGATGTTGATAATGACAAATTAGCCACACTTTTCGAACAAGCCGGAACAGTCGACTCTGCAAAGGTTATACATAAAAAGACTACCGATAATCAGAGTCTTGTTGGCCATGGATATGTAACCATGATCACAGTTAAAGAAGCCGAGTCTGCTATAGACAAGTTCAACGGCTACGATTATGATGGAAGCTTGTTGAGTGTGAATAAGGCTAATACCAGAAGATCTAGGCCTGAGCAACCACGTATATCTGAACCTGTCACAAAAGCTTATGTAGGTAACTTGCCATGGGAAGTTGATAATACTAAGCTTGAGAAAAATTTCAGTGAACATGGTAAGGTTGTGAGTGCATGA 525 0.3981 MEPGQMEETGKLIALSYEEDDSEIDIQSEITYAKKCAELEFSELTEEEEAELLVGNLPLDVDNDKLATLFEQAGTVDSAKVIHKKTTDNQSLVGHGYVTMITVKEAESAIDKFNGYDYDGSLLSVNKANTRRSRPEQPRISEPVTKAYVGNLPWEVDNTKLEKNFSEHGKVVSA* 175
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g2757 174 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 50 130 IPR000504 GO:0003723
Psa5g2757 174 PANTHER RIBONUCLEOPROTEIN 37 174 - -
Psa5g2757 174 Gene3D - 18 140 IPR012677 -
Psa5g2757 174 SUPERFAMILY RNA-binding domain, RBD 50 173 IPR035979 GO:0003676
Psa5g2757 174 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 52 122 IPR000504 GO:0003723
Psa5g2757 174 PANTHER OS02G0815200 PROTEIN 37 174 - -
Psa5g2757 174 Gene3D - 141 174 IPR012677 -
Psa5g2757 174 SMART rrm1_1 51 126 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g2757 Psa-Chr5 209253857 209254567 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g2757 49 174 Eukaryotic Initiation Factors Gene Family AT1G71770 29.921 7.79e-10 55.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g2757 - - gmx:100810381 154.451