Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g2712 ATGACAACCAGATTCAAGAAGAACAGGAAGAAGAGAGGTCATGTCAGTGCCGGTCACGGTCGTATCGGAAAGCACCGAAAGCATCCCGGAGGTCGCGGTAACGCTGGAGGCATGCACCACCACCGGATCCTCTTCGACAAGTACCATCCAGGTTATTTCGGTAAGGTTGGTATGCGATACTTTCACAAGCTTCGTAACAAATTCTATTCCCCAATTGTGAACATAGACAGGCTCGCTTCTTTGATTCCTCAAGAGGTTAAGGACAAAGCTCTTAAGGAAAAGAAAGCTCCTGTTATTGATGTTACTCAGCATGGCTACTTTAAGCTTTTGGGGAAAGGAGTTTTGCCTCAGAATCAGCCTTTTGTGGTCAAGACGAAGCTTATTTCTAAGATTGCTGAGAAGAAGATTAAGGAGGCTGGTGGAGCTGTTATTCTTACGGCTTAG 444 0.4572 MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRYFHKLRNKFYSPIVNIDRLASLIPQEVKDKALKEKKAPVIDVTQHGYFKLLGKGVLPQNQPFVVKTKLISKIAEKKIKEAGGAVILTA* 148
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g2712 147 Gene3D - 58 147 - -
Psa5g2712 147 SUPERFAMILY Ribosomal proteins L15p and L18e 6 146 IPR036227 -
Psa5g2712 147 ProSitePatterns Ribosomal protein L15 signature. 108 140 IPR001196 GO:0003735|GO:0005840|GO:0006412
Psa5g2712 147 PANTHER 60S RIBOSOMAL PROTEIN L27A 1 147 - -
Psa5g2712 147 Hamap 50S ribosomal protein L15 [rplO]. 1 146 IPR030878 GO:0003735|GO:0006412|GO:0015934
Psa5g2712 147 Pfam Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A 28 143 IPR021131 -
Psa5g2712 147 PANTHER 60S RIBOSOMAL PROTEIN L27A-3 1 147 - -
Psa5g2712 147 MobiDBLite consensus disorder prediction 1 34 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g2712 Psa-Chr5 206322061 206323424 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g2712 1 147 Cytoplasmic Ribosomal Protein Gene Family AT1G70600 83.673 8.08e-89 253
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g2712 K02900 - gmx:100802235 270.781
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa5g2712 5 206322061 206323424 Psa5g2712 5 206322061 206323424 ECH