Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g2709 ATGGGTCGCCATTCCTGTTCTTTAAAGCAAAAACTAAGAAAAGGTTTATGGTCCCCTGAAGAAGATGAGAAGCTTTTCCATTACATAACCATCTTTGGTGTTGGTTGTTGGAGTTCAGTTCCCAAACTAGCAGGGTTGCAAAGATGTGGAAAGAGTTGTAGATTGAGATGGATAAACTACTTGAGACCTGACTTGAAGAGAGGAATGTTCTCACAACAAGAGGAGAATCTCATTATCACTCTTCATGAAGTACTTGGAAATAGATGGGCTCAAATTGCTGCACAGTTACCAGGGAGAACAGATAATGAGATAAAAAACTTTTGGAATTCTTGTTTGAAGAAGAGGCTAATGAAGCAAGGGATTGATCCAGCTACACATAAGCCATTCTTCAATATTACTGAATCAGTTATAAAAGAGAATGAAAAATCATCGATGCTAATGCCGACACTGTCTCAACCTCAAAGAGCTTTATCTTCACATGAATATTATTCACAAGCACTTCTAATGAGTGATCTGAATAATTATCACTGTAATATGAATGGTTTATCTTTTACAGAAGCTTCAAGAAAAACTCTATTGAATTCGAGTAAGCCAGCATTTGACCCGTTATGCTACAATTTATCTGTGAGCAATTATTATCAGCCAAGGCTAAGAGAATTTGAACAGAATCTATTTCTCGGAAGTGATTCAATTTCAAACTATTTCTTCGATTCAATGCCTTGTCTAAATAATTCAGACAACAATAGTTCAGCTTCCAAGTTTAGTTCTCTTTTGGTGAATGAAAACTCGAGCAATGGTTGTTCAACTATGAATGATTATCTAGCGTGTGAAATGAGCAGCAACATGATCGAAAATGCTGGTGGATTATTCTCATGGGAAGGTGAGGAGAACAATGTTTTGGATCCTTTGTTACAGTTTGAAGTCAATGCAGTAAAATGTGAAGAGTTGTTGATCAACAAGACAAGTTCATGGCAAGAAGGACAGTTTCTGACTCATAATAATTCAATAAACTTGAGTGCCTATCCTTTAACGTCACTGTCAGAAGATCTAAGTAATGAAGCTAATTTTGATGTATTTCAGCATTTATGA 1089 0.3609 MGRHSCSLKQKLRKGLWSPEEDEKLFHYITIFGVGCWSSVPKLAGLQRCGKSCRLRWINYLRPDLKRGMFSQQEENLIITLHEVLGNRWAQIAAQLPGRTDNEIKNFWNSCLKKRLMKQGIDPATHKPFFNITESVIKENEKSSMLMPTLSQPQRALSSHEYYSQALLMSDLNNYHCNMNGLSFTEASRKTLLNSSKPAFDPLCYNLSVSNYYQPRLREFEQNLFLGSDSISNYFFDSMPCLNNSDNNSSASKFSSLLVNENSSNGCSTMNDYLACEMSSNMIENAGGLFSWEGEENNVLDPLLQFEVNAVKCEELLINKTSSWQEGQFLTHNNSINLSAYPLTSLSEDLSNEANFDVFQHL* 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g2709 362 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Psa5g2709 362 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Psa5g2709 362 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Psa5g2709 362 Gene3D - 68 141 - -
Psa5g2709 362 CDD SANT 70 109 IPR001005 -
Psa5g2709 362 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 116 IPR017930 -
Psa5g2709 362 SUPERFAMILY Homeodomain-like 12 108 IPR009057 -
Psa5g2709 362 CDD SANT 17 61 IPR001005 -
Psa5g2709 362 PANTHER MYB TRANSCRIPTION FACTOR 1 356 - -
Psa5g2709 362 Gene3D - 11 67 - -
Psa5g2709 362 PANTHER MYB DOMAIN PROTEIN 55 1 356 - -
Psa5g2709 362 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 65 IPR017930 -
Psa5g2709 362 SMART sant 66 114 IPR001005 -
Psa5g2709 362 SMART sant 13 63 IPR001005 -
Psa5g2709 362 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g2709 Psa-Chr5 205705886 205707393 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g2709 1 143 MYB Transcription Factor Family AT4G01680 78.082 3.79e-78 238
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Psa5g2709 Myb_DNA-binding 7.3e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g2709 K09422 - gmx:100811140 381.333
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa5g2709 5 205705886 205707393 Psa5g2709 5 205705886 205707393 ECH
Psa4g1392 4 98262872 98264763 Psa5g2709 5 205705886 205707393 PCT