Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g2702 ATGGAAGGATTAGCAACTGGGTCGAATGAAAGGAACGAACTTGTTCGAGTTAGACATGGTTCTGATTCTGGGTTTTGTCAAATATGTGGCGATACTGTTGGATTAGCAGCCACGGGTGATGTCTTTGTTGCTTGTGACGAGTGTGCCTTCCCACTATGTCATCCTTGTTACGAATACGAAATTAAAAATGTGAGCCAATTATGTCCACAATGCAAGACTAGATACAAAACTCGCAAAGACGGTCCTCGAGTGAAGGGAGATGACGATGAAGATGATGTCGATGGTCTACGGAATGAGGTCAAGTATGGTCCAGGAAATAATTCTAAGACGGGATGGCAATGGGATGAAGATGCTGACCTCTCTTCATCTTCTGGACACGATTCTCAATTACAAAATCCCCATCTCACAAATGGACAGCTGATGTCTGGTGAGATTGCATGTGCCACATCTGATACTCAATCCGCGCAAACTACATCAGGTCCTTTGGGTCAATCCGGAATCGTTCATTCGCGTCCCTATGTTGATCAAAAGCAACCAGGTCTCGAGAGTGACGAGGAGATCAGGCGAGTGCCAGATATGGGAGGTGAATCTGCGGGAACTTCAGCCTCTCGTAAAGGCACTGGTTCAACTGCTGGTCCTGAACGCGCTCAAGGGACTGGAGAGGGTCAGAAAAAGAGAGGGAGAAGCCCAGCTGACAAAGAAAGCAAACGGCTGAAGAGGCTGCTGAGGAACCGAGTTTCAGCTCAGCAAGCAAGGGAGAGGAAAAAGGCGTACTTGAGTGATTTGGAAACAAGAGTCAATGACTTGGAGAAGAAGAATTCAGAGCTTAAAGAAAAACTTTCAACTTTGCAGAACGAGAATCAAATGCTGAGACAAATATTGAAGAACACGACAGCAAGCAGGAGAGGAGGCAATAGTGGTACCAACAATGCTGAATGA 939 0.4611 MEGLATGSNERNELVRVRHGSDSGFCQICGDTVGLAATGDVFVACDECAFPLCHPCYEYEIKNVSQLCPQCKTRYKTRKDGPRVKGDDDEDDVDGLRNEVKYGPGNNSKTGWQWDEDADLSSSSGHDSQLQNPHLTNGQLMSGEIACATSDTQSAQTTSGPLGQSGIVHSRPYVDQKQPGLESDEEIRRVPDMGGESAGTSASRKGTGSTAGPERAQGTGEGQKKRGRSPADKESKRLKRLLRNRVSAQQARERKKAYLSDLETRVNDLEKKNSELKEKLSTLQNENQMLRQILKNTTASRRGGNSGTNNAE* 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g2702 312 SUPERFAMILY RING/U-box 18 94 - -
Psa5g2702 312 PANTHER TRANSCRIPTIONAL ACTIVATOR HAC1 148 302 - -
Psa5g2702 312 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 239 254 IPR004827 GO:0003700|GO:0006355
Psa5g2702 312 CDD mRING-HC-C4C4_CesA_plant 25 74 - -
Psa5g2702 312 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 8 98 IPR013083 -
Psa5g2702 312 MobiDBLite consensus disorder prediction 78 98 - -
Psa5g2702 312 MobiDBLite consensus disorder prediction 78 130 - -
Psa5g2702 312 SUPERFAMILY Leucine zipper domain 236 294 IPR046347 GO:0003700|GO:0006355
Psa5g2702 312 SMART brlzneu 232 296 IPR004827 GO:0003700|GO:0006355
Psa5g2702 312 MobiDBLite consensus disorder prediction 219 255 - -
Psa5g2702 312 CDD bZIP_HY5-like 237 288 - -
Psa5g2702 312 Pfam bZIP transcription factor 233 294 IPR004827 GO:0003700|GO:0006355
Psa5g2702 312 MobiDBLite consensus disorder prediction 149 255 - -
Psa5g2702 312 Coils Coil 231 300 - -
Psa5g2702 312 Pfam Zinc-binding RING-finger 23 93 IPR027934 -
Psa5g2702 312 MobiDBLite consensus disorder prediction 103 130 - -
Psa5g2702 312 PANTHER TRANSCRIPTIONAL ACTIVATOR HAC1 148 302 IPR044280 GO:0000981|GO:0045944
Psa5g2702 312 MobiDBLite consensus disorder prediction 178 192 - -
Psa5g2702 312 Gene3D Single helix bin 255 296 - -
Psa5g2702 312 MobiDBLite consensus disorder prediction 200 216 - -
Psa5g2702 312 MobiDBLite consensus disorder prediction 149 165 - -
Psa5g2702 312 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 234 297 IPR004827 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g2702 Psa-Chr5 205323717 205326736 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g2702 172 293 bZIP Transcription Factor Family AT5G11260 69.919 2.65e-52 168
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Psa5g2702 zf-UDP 1.1e-33 CL0229
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g2702 K10999 K16241 aprc:113855639 499.204