Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g2695 ATGGATATCAACATCAAAATAAATGGAGAAATAGAGAAGGTGAATGGGAAGGAACTAAGTTACAGTGAATTTGTTGAAAGATATATGGAGAAGAACAAGCCAGTGGTGCTAACTGGATTAATGGACAATCATTGGAAGGCTTGCACTGATTGGGTTAGCCCTAATGGAAAACCTAATCTTCAATTTTTCTCTACTCATTTTGGCGACTCTAAAGTTCAGGTTGCAGACTGTGATACTAGATATTTTACTGATCAAAAAAGGGAGGAGATGTCCGTCTCCGATTTCGTCGGACTTTGCTTTAAACTTGAGGGTTCTGCAGTTCAGTGCAGTAATCAAAATGGTGTAAGTAATGGTGACTCTGCATCTGTACCGTATTTGAAGGATTGGCATTTTGTGAAGGAGTATCCTGATTACGCAGCATACATCACTCCAATGTTCTTTTGTGATGATTGGCTCAACTTGTATCTCGATAATTTCAGAATGAATACTTATTCTGACAGAGACCAGCAAAATAAGGAAATATGTTGCTCTGATTATCGTTTTGTTTACATGGGAGTTAAAGGATCTTGGACTCCTCTACACGCTGATGTTTTCAGGTCGTATAGCTGGTCAGCAAATGTCTGTGGAAAGAAGAGATGGTTTTTCCTAGATCCTTCCCAGTGTCATCTTGTGTTTGACAGGAACATGAAAAGCTGTGTATTTAATATCTTTGATGAAGTATCTGACTCAAAATATCCTAGTTTTAAAAAGGCTATCTGGTTAGAATGCACACAAGAAGAAGGGGAAATCATATTTGTTCCCAGCGGATGGTATCACCAAGTTCATAATTTGGAGGATACAATATCTATAAACCACAATTGGTTCAATGCCTATAACCTTTCTTGGGTGTGGAGTTTACTTTTAAGGGACTACAATGAGGCCAAGGAATACATAGAAGACATCAAGGATATATGTGATGATTTTGAAGGTCTCTGCCAGCGCAATCTTGCTGCTAACACAGGGATGAATTTTTATGACTTCTTTACTTTCATTTCATACTTCACCTTGGCCAACTTGGTGCTGCTTTGCTACATAAATAGAAGAAATGGAAGTACAACTGGAAACTCGTCAAGAGTAGCTCAGCATGTATCTATGAATATTGGGTCCATTAGAAAGATTGCATCAGAGATGAAACACAGTGGTGGTCTAGAAGGGAATCATGATTGCATTGTGGATATGATAAAAACATTTGAAGATCCCAGGTTTTCCAAATTCTGCATGCAAGTGGGAAAAACATATTTAAGAATACACGGGCAATCCGATATGTTCTCTGATTTTGTGAGTGCTTCCATGGTTGATTTGGTGGATCTCGGTATTTTGAAAGCACATACTTCTTCTCAGGTTTACACACCTGAAGACCTCATCAAGTTTATAGACTACGCCATTGCAAAACTGGGTGACTTTTACATCGAGTCATCTGTACAGCATGTTGCTTGA 1476 0.3855 MDINIKINGEIEKVNGKELSYSEFVERYMEKNKPVVLTGLMDNHWKACTDWVSPNGKPNLQFFSTHFGDSKVQVADCDTRYFTDQKREEMSVSDFVGLCFKLEGSAVQCSNQNGVSNGDSASVPYLKDWHFVKEYPDYAAYITPMFFCDDWLNLYLDNFRMNTYSDRDQQNKEICCSDYRFVYMGVKGSWTPLHADVFRSYSWSANVCGKKRWFFLDPSQCHLVFDRNMKSCVFNIFDEVSDSKYPSFKKAIWLECTQEEGEIIFVPSGWYHQVHNLEDTISINHNWFNAYNLSWVWSLLLRDYNEAKEYIEDIKDICDDFEGLCQRNLAANTGMNFYDFFTFISYFTLANLVLLCYINRRNGSTTGNSSRVAQHVSMNIGSIRKIASEMKHSGGLEGNHDCIVDMIKTFEDPRFSKFCMQVGKTYLRIHGQSDMFSDFVSASMVDLVDLGILKAHTSSQVYTPEDLIKFIDYAIAKLGDFYIESSVQHVA* 492
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g2695 491 Pfam Cupin-like domain 23 287 IPR041667 -
Psa5g2695 491 SUPERFAMILY Clavaminate synthase-like 7 316 - -
Psa5g2695 491 PANTHER ARGININE DEMETHYLASE AND LYSYL-HYDROXYLASE JMJD 8 478 - -
Psa5g2695 491 ProSiteProfiles JmjC domain profile. 149 304 IPR003347 -
Psa5g2695 491 SMART cupin_9 124 304 IPR003347 -
Psa5g2695 491 Gene3D Cupin 3 288 - -
Psa5g2695 491 PANTHER 2-OXOGLUTARATE AND IRON-DEPENDENT OXYGENASE JMJD4 8 478 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g2695 Psa-Chr5 204901254 204907820 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g2695 8 296 Glycosyltransferase AT1G78280 23.746 2.59e-14 73.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Psa5g2695 Cupin_8 1.5e-25 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g2695 - - gmx:100803814 799.66
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa5g2695 5 204901254 204907820 Psa5g2695 5 204901254 204907820 ECH