Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g2669 ATGGTAATGGAAATTGTCATTTCTTTGATAATCTTATTCGTTGGGATTGCTATTCTGGTTTCTATCCATTTCTGCATAGTTGGTAGAGCTTTTACAAGGGATAATAATAGTGCAGACATTCAAGTCCAGAGTAGTACTAGCAGAACAACAAAAGGAATGTTTGGTGACAATATTGGTGACTTGAAGAATCTTCCTTGCTTTGATTATGTGGAACAAGAGAGAGGAAACAGCAACAACAATAACAGCAACGTTGTCGACTGTGCTGTTTGTTTGGAGAGTTTTAACGTTGGTGATGCTTGTAGGTTGTTGCCTAATTGCAGACACAGTTTTCATGTTCAGTGTATAGACTTGTGGATTCTCAAGAAACCGTTTTGTCCGATTTGTAGAACATGGGTTCATTCAAGAGTAGTTCTGAGAGAAGAAAGTGCTGTTTCTGATTCTGATATTGTAGAAATTGAAATGCCGTAG 468 0.3761 MVMEIVISLIILFVGIAILVSIHFCIVGRAFTRDNNSADIQVQSSTSRTTKGMFGDNIGDLKNLPCFDYVEQERGNSNNNNSNVVDCAVCLESFNVGDACRLLPNCRHSFHVQCIDLWILKKPFCPICRTWVHSRVVLREESAVSDSDIVEIEMP* 156
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g2669 155 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 1 152 - -
Psa5g2669 155 ProSiteProfiles Zinc finger RING-type profile. 87 129 IPR001841 -
Psa5g2669 155 SUPERFAMILY RING/U-box 86 135 - -
Psa5g2669 155 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 59 137 IPR013083 -
Psa5g2669 155 SMART ring_2 87 128 IPR001841 -
Psa5g2669 155 Pfam Ring finger domain 86 129 IPR001841 -
Psa5g2669 155 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 1 152 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g2669 Psa-Chr5 203511034 203512433 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g2669 31 150 Rapid Response to Elicitors AT3G16720 32.500 9.32e-18 76.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g2669 - - gmx:102662675 187.193