Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g2657 ATGGGTGGCAATGGAAAACACAGGTGGAAAATCTCCTTCCATCGTTCTTCCTCTCACTCTAAACCCCTCCAACCTCCCAATGAGTTTCTATGCCCTATCACCGGGTCAATAATGTCCGACCCGGTTGTTGTCTCCTCGGGTCAAACCTTCGAACGTCTCTCTGTTCAAGTTTGCACTGATTTAAAATTCTCCCCGGTACTAGAAGACGGGTCCCGACCCGATTTCTCAACAATCATCCCCAATTTAGCCATCAAGAAAACAATACTCAACTGGTGCGACAAATCATGTACCCAACACCCGCACACACCGGATTACGACTCAGTGGAGAAGCTTGTAAGAGAAAAAATTGCGGTGGTGGCGGAGGCGGAGAAGGAAGAACCGGTTAGGGTTTCTGAAAAGGAGCTTCTCAACGCGGTGGCGGATAACCCGCCGGTGATATTCTCTCACGCTGCTACTGAGGTAGGGCCACGTGTCAACCATTTCAACTCGGGATCTTCATCTGAGGAATCGGTGATCATCCCGTCGAGTCCAGAGACGCCTTTACCTTTCACGGTTCGTCCAACGTGTTTCTCTCCTTCTTCATCTTCCTCCTTCGAGATCGAAGTCCAAAACCCTAACGTACCTGTTTCGGAAGAAGAGGAAATTCTATTGAAGAAGCTGAAGAGCAAGGAGGTTTTCGAACAAGAACAAGGGGTTCTCTCGCTTAGGAGCATCACGAGGAACAGAGAAGAAACTAGGGTTTCGTTATGCACGCCGCGGATTTTGTCGTCGCTTCGGTCTCTGATTGAATCCCGTTACGTTGTGGTTCAGGTCAACGCTGTTGCTTCGTTGGTCAACCTTTCACTTGAGAAATCGAACAAGATGAGAATTGTGAGGTCGGGATTTGTTCCGTTTCTCATTGATGTGTTGAAGGGAGGATCCAGTGAGTCGCAGGAACACGCCGCAGGTGCTATTTTTAGTTTGGCTTTGGATGATGATAACAAGATGGCGATTGGAGTTCTCGGTGCGTTGCAGCCGCTAATGCACGCGATGAGGTCTGAATCGGAGCGGACTCGCCATGACTCAGCGCTTGCGCTTTATCATTTGACACTGGTTCAGAGTAACCGTGTCAAGCTTGTGAAGCTTGGGGTGGTCTCCACGCTGATTTCGATGGTGATGACGGGGACGATGGCGAGTCGGGTTTTGTTGATTCTCTGTAATCTGGCTATGTGTGTGGAGGGAAGAACGGCGATGCTTGACGCCAATGCGGTGGAGTGTCTGGTGAGTTTGTTGAGAGGAAACGAGTTGGACTCGGAGGCGACTCGTGAGAATTGTGTTGCTGCTTTGTATGCGTTGAGTCATGGGAGCTTGAGGTTTAAAGGGTTGGCGAAGGAAGCGAAAGCTGTGGAGGTTTTAAGGGTGATTGAAGAAACTGGGACAGAGAGGGCGAGGGAGAAGGCCAAAAGGGTGTTGCAGAAGATGAGGGGTTTTGAAGATGGTGATGACGACGATGGCGAGTTTGATAGTCTTTTTGAATCGGGTGGGTTGAGTCGAGCTCGTTACCGAGTTGCTGCAGCTAGGAACAACAACCTTATCAATTCAACTACATTTTAG 1593 0.4947 MGGNGKHRWKISFHRSSSHSKPLQPPNEFLCPITGSIMSDPVVVSSGQTFERLSVQVCTDLKFSPVLEDGSRPDFSTIIPNLAIKKTILNWCDKSCTQHPHTPDYDSVEKLVREKIAVVAEAEKEEPVRVSEKELLNAVADNPPVIFSHAATEVGPRVNHFNSGSSSEESVIIPSSPETPLPFTVRPTCFSPSSSSSFEIEVQNPNVPVSEEEEILLKKLKSKEVFEQEQGVLSLRSITRNREETRVSLCTPRILSSLRSLIESRYVVVQVNAVASLVNLSLEKSNKMRIVRSGFVPFLIDVLKGGSSESQEHAAGAIFSLALDDDNKMAIGVLGALQPLMHAMRSESERTRHDSALALYHLTLVQSNRVKLVKLGVVSTLISMVMTGTMASRVLLILCNLAMCVEGRTAMLDANAVECLVSLLRGNELDSEATRENCVAALYALSHGSLRFKGLAKEAKAVEVLRVIEETGTERAREKAKRVLQKMRGFEDGDDDDGEFDSLFESGGLSRARYRVAAARNNNLINSTTF* 531
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g2657 530 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 38 1 521 - -
Psa5g2657 530 SMART Ubox_2 28 91 IPR003613 GO:0004842|GO:0016567
Psa5g2657 530 Pfam U-box domain 26 93 IPR003613 GO:0004842|GO:0016567
Psa5g2657 530 PANTHER U BOX DOMAIN-CONTAINING 1 521 - -
Psa5g2657 530 Pfam Armadillo/beta-catenin-like repeat 324 363 IPR000225 GO:0005515
Psa5g2657 530 Gene3D - 214 390 IPR011989 -
Psa5g2657 530 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 25 99 IPR013083 -
Psa5g2657 530 SUPERFAMILY RING/U-box 10 97 - -
Psa5g2657 530 SUPERFAMILY ARM repeat 214 487 IPR016024 -
Psa5g2657 530 SMART arm_5 324 364 IPR000225 GO:0005515
Psa5g2657 530 SMART arm_5 283 323 IPR000225 GO:0005515
Psa5g2657 530 SMART arm_5 404 447 IPR000225 GO:0005515
Psa5g2657 530 ProSiteProfiles U-box domain profile. 24 98 IPR003613 GO:0004842|GO:0016567
Psa5g2657 530 CDD RING-Ubox 30 58 - -
Psa5g2657 530 Gene3D - 391 489 IPR011989 -
Psa5g2657 530 Coils Coil 105 125 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g2657 Psa-Chr5 201965924 201968729 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g2657 1 530 U-box Gene Family AT5G65200 56.506 0.0 567
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g2657 - - gmx:100784564 734.947
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa5g2657 5 201965924 201968729 Psa5g2657 5 201965924 201968729 ECH