LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Psa5g2650	ATGGTGGTAACATCAAGATCACACATTAATTTGGTAGACTTGGTGACGGGGGACAATATCAATTTCCGCCAAACTCCTCCGCGATTTATGCCGGTTCCAGGAGTTATGTCGATTGATGGTGATGATTCAAATGCTTTATCGTTAGTACCACATCGCAAGATGATAATAGTAGCAACATTTCTTCCTCTGGATGCTAAAAAGGATGACATTTCTGGTAGGTGGTGCTTTAGTAGGGATGATGATTCAATTTTCCGGCAGTTAAAAGATGGTCTCTCATCTGATATTGATGTTGTTTATGTCGGATCTCTGAAGGTCAATGTTGATGAAAATGAGCAAGAGGCAATTTCCCTTCATTTGCTGGAGGAGTTCAATTGCTTGCCTACTTTTATTCCTTCGGAACTCCATAAAAAGTTTTATGATGGATTCTGCAAGAACTATTTGTGGCCTCTATTCAATTACATGGTGCCTAAGTATCAGTGCAGTTGCAATCACTTCGATTGGTCACTTTGGCAGGCTTATGTTTCTGCGAACAGGATGTTTGCCGATAAAGTCATGGAAGTCCTTAATCCAACAGAGGATTATGTATGGGTTCATGATTATCATCTTATGGTTCTTCCATCATTTCTGCGGAGGCGGTTTAGTCGTGTCAGGCTAGGCTTTTTCCTCCACAGTCCGTTTCCTTCCTCCGAAATTTTTATAAATATACCTGTCAGAACTGAAATTTTGAAAGCAGTGCTTAATGTCGATATGATTGGTTTTAACACATTTGATTATGCTCGCCATTTTCTATCCATCTGCATTCTATTGCTTGGTTTGGAGTATGAATCAAAAAGTGATCACTTTGAGATTGAATACTTTGGCCGTAAAATATTCATTAAGATATTGCCTACTGGGATTCATATGGGTTGCATTCAATCCGCTTTAAATCACCCTTCCACTTCTATCAAAGTTAGAGAAATCTGCAAACAACTTAAGGGGAAAAAACTTATTATTAGTGTTGACGACCTGGATATTTTCAAAGGCGTGGACTTGAAGTTTGCAGCCTTTGAACAACTATTGAAACTGTGCCCTGAACTACTGGGACAGTTGGTATTAGTCCAAATTTTAAATCCTTCAAGGAGTGATTGTAGATATGTTGAAGAAGCGAAGAAGATATCCCACATGCTTGCAAAATGGATAAATCGAAGGTTTGGTTTTCTAGGCTATACTCCTGTCATAATCATTGATCGTTATGTTCCTTTCCATGAAAAGGCGGCATATTACGCATTAGCGGAATGTTGCTTTGTGAATGCAGTGCAGGATGATATGAATTTGGTTCCGTTAAAGTACATTGCGTGCAGGCATGGGAGTTCTAAAATCGACCAAGCATTAGATATAGCTTCCGACTACCCTCGGACAAGTTCAATTGTTGTTTCTGAGCTTATAGGTTGCCCACCGTCTCTTAGTGGGGCAATCAGGACGACTCCGTGGGATATAAATGTCGTTGCTGAAGCGTTGAAGTTTGCTATCACAATGTCCAATGGAGAGAAACAGTGTCGGCATGAGAAGAACTATCAATATGTTAGCACTCGTGATGTGGCTAACTGGGCCCAACAGTTTGAGCAAGACCTAGTGTTCTCGTGTAAGGATCATTATATGAAACTTTACTGGGGTTTTGGCTTTGGCTTGGAGTTCAGAGTCTTGGCCCTATCTGCTAGTTTCAAGAAGCTGTCAAGAGACTATGTTGTTTCTGCGTATAAAAGGACAAAATGCAGGGCAATCTTTTTGGCTTATGATGGCACAATCATACCTGAGGGTTCCAGTTTTGAATCCCCTGGTCCACATGTCATATCTATGCTAAATAATCTCTGCAAAGACCCTAACAATACTGTGTTTATTGTCAGTGGTCAGGGGAGGCCTTCATTGAGAAAATTGATTAATCAGTGTGGGAATCTTGGTATAGCAGCTGAGCATGGTTGTTATATAAGGTGGGGTGGAGAATCATATTGGAAAATGAATCATGTTGGCACAACTTATGCATGGAAAAGTATCACTGAAAGTGTGATGCGATCATATACTGATGCAACAGAGGGCTCCTATATGGAGATCAGGTACAGTGCATTGGAATGGAATTACCATGACGCCGAAACTGATTTTGGATCACAGCAAGGCCGAGAGATGTTGGAGCTTCTTGGAAGTGAGCTTGCCAATGAGCCTGTTGATGTTAAAAAGGGGAAGCATATTGTTGAGGTCAAGCTTCAGGGAATTTCAAAAGGGTTAGTTGTAGACGAAGTTCATTCTATACTAACAATGAGTGGAAAAGCACTGGATTTTGTTCTGTGCATTGGGGATGATAGATCTGATGAAGACATGTTTGAGAGCATATCAAACAAATCGTATGCTTCAACATCATCTTCATCACCCGAAATATTTACATGTACTGTTGAGCAGAAGCCCAGCAAAGCTAGATACTACTTGGATGATACTGTAGAAGTCATGACCTTACTTCAGGGTCTTGCTGCTGCTGCTGCTGCTAGAGAGTCTACAACAATATCTTCTACTGGCACCTCTTCTTAA	2556	0.4069	MVVTSRSHINLVDLVTGDNINFRQTPPRFMPVPGVMSIDGDDSNALSLVPHRKMIIVATFLPLDAKKDDISGRWCFSRDDDSIFRQLKDGLSSDIDVVYVGSLKVNVDENEQEAISLHLLEEFNCLPTFIPSELHKKFYDGFCKNYLWPLFNYMVPKYQCSCNHFDWSLWQAYVSANRMFADKVMEVLNPTEDYVWVHDYHLMVLPSFLRRRFSRVRLGFFLHSPFPSSEIFINIPVRTEILKAVLNVDMIGFNTFDYARHFLSICILLLGLEYESKSDHFEIEYFGRKIFIKILPTGIHMGCIQSALNHPSTSIKVREICKQLKGKKLIISVDDLDIFKGVDLKFAAFEQLLKLCPELLGQLVLVQILNPSRSDCRYVEEAKKISHMLAKWINRRFGFLGYTPVIIIDRYVPFHEKAAYYALAECCFVNAVQDDMNLVPLKYIACRHGSSKIDQALDIASDYPRTSSIVVSELIGCPPSLSGAIRTTPWDINVVAEALKFAITMSNGEKQCRHEKNYQYVSTRDVANWAQQFEQDLVFSCKDHYMKLYWGFGFGLEFRVLALSASFKKLSRDYVVSAYKRTKCRAIFLAYDGTIIPEGSSFESPGPHVISMLNNLCKDPNNTVFIVSGQGRPSLRKLINQCGNLGIAAEHGCYIRWGGESYWKMNHVGTTYAWKSITESVMRSYTDATEGSYMEIRYSALEWNYHDAETDFGSQQGREMLELLGSELANEPVDVKKGKHIVEVKLQGISKGLVVDEVHSILTMSGKALDFVLCIGDDRSDEDMFESISNKSYASTSSSSPEIFTCTVEQKPSKARYYLDDTVEVMTLLQGLAAAAAARESTTISSTGTSS*	852

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Psa5g2650	851	PANTHER	ALPHA,ALPHA-TREHALOSE-PHOSPHATE SYNTHASE (UDP-FORMING)-RELATED	4	841	-	-
	Psa5g2650	851	SUPERFAMILY	UDP-Glycosyltransferase/glycogen phosphorylase	53	537	-	-
	Psa5g2650	851	TIGRFAM	T6PP: trehalose-phosphatase	584	832	IPR003337	GO:0003824\|GO:0005992
	Psa5g2650	851	TIGRFAM	HAD-SF-IIB: HAD hydrolase, family IIB	587	787	IPR006379	-
	Psa5g2650	851	Gene3D	Glycogen Phosphorylase B;	307	522	-	-
	Psa5g2650	851	CDD	HAD_TPP	586	826	-	-
	Psa5g2650	851	Pfam	Trehalose-phosphatase	588	821	IPR003337	GO:0003824\|GO:0005992
	Psa5g2650	851	Pfam	Glycosyltransferase family 20	53	537	IPR001830	GO:0003824\|GO:0005992
	Psa5g2650	851	PANTHER	TREHALOSE-6-PHOSPHATE SYNTHASE	4	841	IPR001830	GO:0003824\|GO:0005992
	Psa5g2650	851	SUPERFAMILY	HAD-like	585	833	IPR036412	-
	Psa5g2650	851	Gene3D	-	584	694	IPR023214	-
	Psa5g2650	851	Gene3D	-	715	846	IPR023214	-
	Psa5g2650	851	CDD	GT20_TPS	53	537	IPR001830	GO:0003824\|GO:0005992
	Psa5g2650	851	Gene3D	Glycogen Phosphorylase B;	48	306	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Psa5g2650	Psa-Chr5	201690798	201696303	Dispersed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Psa5g2650	3	838	Trehalose Biosynthesis Gene Families	AT1G23870	56.213	0.0	991

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Psa5g2650	K16055		-	gmx:100812031	1110.52