Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g2647 ATGGCGGAGAATAAACTTTTCCCTTCATCTTTCTCTCCCAACTTTAAAAACGAGTATTTAGAAAACATAGTCGCTTGTACCACCGACAACAACAATGACACATTGTTGATGCCACCACCATCACCTGCACAAACTTTCTCAAATGAATATATTGATCTCTCTCGAGATCCAAGAAAGAAAATTCCCAAAAGCTCTTCCAAAAAACGTAAGGGTAGACCCCAGGGCTCTAGAAATAAGCCTAAACCACACGTTGTTATCGAGGGAAACATAGAAGCTTTCACAGAAGTGGTTACAATTAAGATCTGTGTAGGAGAAGATATTGTGAAAACTCTAATTAATTATGCTATACGGCGTCAAGCTGACATAATAGTGTCGAGGGGTTTCGGTCTTGTGACTAATGTTATTCTTCTTGACCCAATATCTTGCGTCCCATTATTACCCATTGAAGGACCATTACATATGACATCTTTATTTGGAACATACGTAAATCCCAGTTGTGACTATGTTCCTCTGCAATTCATAGCTAATCCACCATGTTCCTCTTTTACCATTTATTTCTCTGGTATTAATGGACATGTCTTTGGAGGAGTTGTTGGTGGAAAAGTTATTGCTGCTGGGGTTATTTTTATTAATGCCACTGTTGTTAAGAAAACCACGTTCCATAGAGCGGTTTCCATCGAGAGCAATGATCCAAAAATTGAAGAAGGTGGATCAATTCATGACAATGGTGTCATCATCAATGCAGACCATGTAGCACATGAAACTCGCATGTGTCCGTGCTTCAATGACGTGGCTGCTAATTCAACTGAACTGAATCATCAAATGTCCCCTAACTATCTTCCTACGGATGAGAGTGCCATGTCGTGGAACCACTCCACTCACACTAAAAACTTCTAG 897 0.3991 MAENKLFPSSFSPNFKNEYLENIVACTTDNNNDTLLMPPPSPAQTFSNEYIDLSRDPRKKIPKSSSKKRKGRPQGSRNKPKPHVVIEGNIEAFTEVVTIKICVGEDIVKTLINYAIRRQADIIVSRGFGLVTNVILLDPISCVPLLPIEGPLHMTSLFGTYVNPSCDYVPLQFIANPPCSSFTIYFSGINGHVFGGVVGGKVIAAGVIFINATVVKKTTFHRAVSIESNDPKIEEGGSIHDNGVIINADHVAHETRMCPCFNDVAANSTELNHQMSPNYLPTDESAMSWNHSTHTKNF* 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g2647 298 MobiDBLite consensus disorder prediction 57 81 - -
Psa5g2647 298 ProSiteProfiles PPC domain profile profile. 91 236 IPR005175 -
Psa5g2647 298 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 45 281 IPR014476 GO:0003680
Psa5g2647 298 MobiDBLite consensus disorder prediction 61 77 - -
Psa5g2647 298 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 45 281 - -
Psa5g2647 298 SUPERFAMILY AF0104/ALDC/Ptd012-like 96 224 - -
Psa5g2647 298 Pfam Plants and Prokaryotes Conserved (PCC) domain 96 213 IPR005175 -
Psa5g2647 298 Gene3D - 94 235 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g2647 Psa-Chr5 201633015 201634352 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g2647 67 222 AT-hook Motif Nuclear Localized (AHL) Family AT5G49700 28.302 1.65e-16 76.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g2647 - - cam:101498013 188.348