Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g2636 ATGGAACACAATCTTAAATCAGCAACATCAAGTGAAGAAGGGGAAGGACAACCTATAAGATGTAAAGCTGCGGTTGCAAGAAAACCAGGTGAGCCATTGGTTATTGAAGAGATCATTGTGGCCCCACCAATGCCTCATGAAGTTCGGATTCGTATTTTGTGTACTTCTCTATGCCACAGTGATTTCACTTTTTGGAAGATGCAGGAATCTCCTGGCATTTTCCCAAGAATTCTGGGTCATGAGGCAGCTGGGGTTGTGGAAAGTGTAGGGAAGGATGTAACTGAAGTTATAGAAGGAGATGTTGTTATTCCGATTTTCCTACCAGATTGTGGAGAGTGTGTAGATTGCAAATCAACCAAGAGCAACCGCTGTACTAATTTCCCGTTCAAGGTTTCCCCTTGGATGCCAAGACATGGGAGCACTAGATTCACCGACCTAAACGGAGATATCATATATCATTTCATGTTTGTTTCAAGTTTCAGCGAGTACACCGTGGTTGACATCGCCAATGTAACAAAAATTGATCCACAAATCTCTCCTGATCGGGCATGTCTTCTCAGTTGCGGTGTTTCAACAGGGGTAGGCGCTGCTTGGAGAACAGCAGGTGTGGAGCCAGGTTCTACAGTTGCTATTTTTGGGCTGGGATCTGTTGGATTAGCAGTAGCAGAGGGCGCTAGATTTTGTGGAGCAACTAGGATTATCGGTGTCGATGTCATGCCTGAAAAATTTGAAATCGGAAAGAAGTTTGGACTTACAGATTTTGTCCATGCTGGAGAAAGTGGGAACAAACCTGTGAGCCAGGTTATCATAGAGATGACTGATGGCGGAGCTGATTATTGCTTTGAATGTGTTGGTATGACGTCATTGGTTCATGAAGCATATGCTTCCTGCAGAAAGGGTTGGGGTAAAACAGTTGTTTTAGGAGTGGACAAGCCAGGAGCAAGGTTAAGTTTCAGTTCTAGTGAGGTTCTTCATGATGGGAAGAGCCTCATGGGATCCTTGTATGGAGGACTCAAACCCAAATCTCATATTCCGATTCTGCTTAAGCATTACATGGACAAGGAACTGCAGTTGGATGAATTTGTGACTCATGAAGTGGAGTTTAAGGACATAAACAGAGCTTTTGATTTGTTGAGTAAAGGACAGTGTCTTCGATGTGTGATTTGGATGGAAAAATGA 1179 0.436 MEHNLKSATSSEEGEGQPIRCKAAVARKPGEPLVIEEIIVAPPMPHEVRIRILCTSLCHSDFTFWKMQESPGIFPRILGHEAAGVVESVGKDVTEVIEGDVVIPIFLPDCGECVDCKSTKSNRCTNFPFKVSPWMPRHGSTRFTDLNGDIIYHFMFVSSFSEYTVVDIANVTKIDPQISPDRACLLSCGVSTGVGAAWRTAGVEPGSTVAIFGLGSVGLAVAEGARFCGATRIIGVDVMPEKFEIGKKFGLTDFVHAGESGNKPVSQVIIEMTDGGADYCFECVGMTSLVHEAYASCRKGWGKTVVLGVDKPGARLSFSSSEVLHDGKSLMGSLYGGLKPKSHIPILLKHYMDKELQLDEFVTHEVEFKDINRAFDLLSKGQCLRCVIWMEK* 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g2636 392 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 79 93 IPR002328 GO:0008270|GO:0016491
Psa5g2636 392 PANTHER ALCOHOL DEHYDROGENASE-LIKE 7 14 389 - -
Psa5g2636 392 Gene3D - 193 333 - -
Psa5g2636 392 Gene3D - 24 385 - -
Psa5g2636 392 SUPERFAMILY GroES-like 341 389 IPR011032 -
Psa5g2636 392 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 178 353 IPR036291 -
Psa5g2636 392 PANTHER ALCOHOL DEHYDROGENASE 14 389 - -
Psa5g2636 392 SUPERFAMILY GroES-like 15 199 IPR011032 -
Psa5g2636 392 Pfam Alcohol dehydrogenase GroES-like domain 45 173 IPR013154 -
Psa5g2636 392 Pfam Zinc-binding dehydrogenase 217 337 IPR013149 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g2636 Psa-Chr5 201292738 201295726 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g2636 46 380 Monolignol Biosynthesis Gene Families AT2G21730 24.786 9.74e-10 57.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g2636 K00121 - gmx:100817521 679.863
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa5g2636 5 201292738 201295726 Psa2g0531 2 24635724 24638743 PCT