Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g2633 ATGGCACATCGTTTGCTCAGAGATCACGAAGCCGATGGCTGGGAACGTTCCGACTTCCCCATCATCTGCGAATCCTGTCTTGGTGACAGCCCTTACGTTCGAATGACAAGGGCTGAGTATGATAAAGAGTGCAAGATTTGTACAAGGCCTTTTACTGTTTTTAGATGGAGACCTGGTAGAGATGCAAGATATAAGAAAAGTGAGATCTGTCAGACATGTAGTAAGTTGAAAAATGTTTGTCAAGTATGCCTTTTGGATCTTGAATATGGACTTCCAGTTCAAGTCCGTGACACAGCTCTCAGTATCAGTTCCAATGATGCTATTCCAAAGAGTGATGTTAATAGGGAGTATTTTGCTGAAGAGCACGACCGCAAGGCTAGAGCTGGTATAGATTATGAGTCCTCTTTTGGTAAAGCACGCCCAAATGATACTATTCTGAAGCTTCAAAGAACAACACCATATTACAAAAGAAACCGGGCACATATTTGCAGTTTCTACATAAGGGGTGAGTGTACCAGGGGAGCTGAGTGTCCTTACAGACATGAGATGCCAGTAACTGGTGAACTGTCTCAACAAAATATCAAAGATCGTTATTACGGAGTGAATGATCCGGTGGCTATGAAGCTACTTGGCAAGGCAGGAGAGATGAACTCGTTGGAGGTTCCCGAGGATGAGAGCATTAAAACACTTTACATTGGTGGACTTGATGCTAGGGTTACCGAGCAGGATTTGCGGGATAACTTTTATGCCCATGGAGAAATTGAGTCCGTCAAAATGGTTCTTCAAAGGGCTTGTGCTTTTGTAACATATACAACAAGAGAAGGTGCAGAAAAGGCAGCAGAAGAACTCTCTAACAAACTGGTTATTAAGGGCCTTAGGCTAAAACTGATGTGGGGCAGGCCTCAGACAGCCAAACTTGAGTCTGATGGTTCTGATCAAGCTAGGCAGGCCTCTGTTGCTCATAGTGGGTTGTTGCCTCGAGCAGTTATATCACAGCAGCAGAACCAAGACCAGACTCAAGGAATGCTGTACTATAACAATCCACCTCCTCAGCAGGAAAGGAGCTATTACCCTTCAATGGATCCTCAAAGAATGGGTGCTCTTATTCCATCTCAAGATGGTCCTCCTGGTGGGCCTTCTGGATCAGGGGAGAACAAACCCCCCAATTCTGAGAAGCAGCAAATGCAACATTATGCCCATCCTATGATGCCACCTCCACATGGCCAATATCATCATCAGTACTATCCTCCATACGGGTCTGGACAAGCTGTGTCTGCACCAGAAACTGGAACATCATCATCGGGTTCACAGCAACAATAA 1320 0.4508 MAHRLLRDHEADGWERSDFPIICESCLGDSPYVRMTRAEYDKECKICTRPFTVFRWRPGRDARYKKSEICQTCSKLKNVCQVCLLDLEYGLPVQVRDTALSISSNDAIPKSDVNREYFAEEHDRKARAGIDYESSFGKARPNDTILKLQRTTPYYKRNRAHICSFYIRGECTRGAECPYRHEMPVTGELSQQNIKDRYYGVNDPVAMKLLGKAGEMNSLEVPEDESIKTLYIGGLDARVTEQDLRDNFYAHGEIESVKMVLQRACAFVTYTTREGAEKAAEELSNKLVIKGLRLKLMWGRPQTAKLESDGSDQARQASVAHSGLLPRAVISQQQNQDQTQGMLYYNNPPPQQERSYYPSMDPQRMGALIPSQDGPPGGPSGSGENKPPNSEKQQMQHYAHPMMPPPHGQYHHQYYPPYGSGQAVSAPETGTSSSGSQQQ* 440
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g2633 439 MobiDBLite consensus disorder prediction 424 439 - -
Psa5g2633 439 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 230 288 IPR000504 GO:0003723
Psa5g2633 439 Gene3D - 213 309 IPR012677 -
Psa5g2633 439 SUPERFAMILY RNA-binding domain, RBD 222 307 IPR035979 GO:0003676
Psa5g2633 439 ProSiteProfiles Zinc finger C3H1-type profile. 157 184 IPR000571 GO:0046872
Psa5g2633 439 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 49-LIKE 1 420 - -
Psa5g2633 439 MobiDBLite consensus disorder prediction 373 439 - -
Psa5g2633 439 Gene3D - 149 212 - -
Psa5g2633 439 Pfam Torus domain 150 194 IPR032297 -
Psa5g2633 439 PANTHER PRE-MRNA-SPLICING FACTOR RBM22 1 420 IPR039171 GO:0003723
Psa5g2633 439 SUPERFAMILY CCCH zinc finger 159 182 IPR036855 GO:0046872
Psa5g2633 439 CDD RRM_RBM22 227 300 - -
Psa5g2633 439 SMART rrm1_1 229 297 IPR000504 GO:0003723
Psa5g2633 439 SMART c3hfinal6 157 183 IPR000571 GO:0046872
Psa5g2633 439 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 228 301 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g2633 Psa-Chr5 201233427 201237642 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g2633 229 405 Eukaryotic Initiation Factors Gene Family AT2G23350 31.122 2.35e-06 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g2633 K12872 - gmx:100778975 777.704