Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g2630 ATGTCATATCGAGGCGGAAGGGATCGGGATCGGTCTAGGAGGGACTATCCTTCAAGGTATGAAGACAATAAGGGGAATGGTGGTTCGGGGCGCGGTGGTGGTAGCAGCAGCAATAGTGGCAATCCTCCTTCCAGGCACCTTTGGGTAGGGAATCTATCCCACAACATTGTAGAAGATGAACTTGCTCACCCTTTCATACGGTTTGGACCGCTGGAAAAAATTGCGTTTCAGCCTGGCAGAAGCTACGCTTTCATCAATTTTGAAGTGGATGAAGATGCCATTGATGCCATGAGATCACTGCAGGGGTTTCCTCTAGCTGGCAACCCGCTTAGAATCGAGTTTGCAAAGGCGGACAAGCCTTCGACAGTAATACGTGATGAAGATTATTCACGTGATGAACGCAGATCAGCGATAAGGGGATCTCCTTTCCCCCAACGAGAGTTTAGAGGACGTCATGGTAGCCCTGAACCACATTATTCTGACAAATCCAAGTTGAGTGATAAAAATCCAGAGCCCAGTGAGGTTTTGTGGCTTGGGTTCCCAGCTCAGTTGAAGGTGGATGAATCAATTTTGGATAGGGCTTTTTCGCCATTTGGTGAGATTGTGAAGATTTCAACATTTCCAGGTCGTAGCTATGCGTTTGTTCGCTATAGAAATCAGAGTTCAGCATGCAGAGCAATAGATGCTCTGAAGGGAAAGTTATTTGGGAATCCCCGTGTACATATTTGTTTTGCCAAGAGTGAATCAGGTTCATCAAGCAGTGGGAAGAGCTCTTTTAATGGCCCTCGATCTCCATCATACAAGTCAAGTGGTCGTGGCGGATCTTCCGAGAACTTTAGGCAGGATTGGAGCTTTGGCGGGGAGCAGAACATTAGTTCTCCGAATATGCTTGGGAATTGGGATTCTCGAGATTCTGATTTTAACAACAGGGGTTCTTCATGGGCTGGTGGAGCTCACGCATATGAGCCAAGGAAAGTTGGAGAGAAGGGCACTCCACTTGGAGTATCACAAGAATTCTATGAACATAAAAATAGTCCATCAAGAGAAAGACACTTTCATCACAGTGATTTTCCACAGAATTATCCTCAAAGGGGTGCATTTTTTGAAGATCCGCAGGGCTTGCCTGAAGATGCACCTTATCTTCATGTGGCTAAAAAGCTAAAGAGTGTTTCTTCTCCTCCTGAGAGAGAGCTTCCAGAGTATGCTTTCTCTGAGTTAGAAAGACAAAAACATGTTTTCCCTAGACAACTACCTGATTTTCCTCACCGTGAGCCTTTCGATAAAAGCTTTGATGCTGGAAACTTCACTTATGGACAAACATTTAATCACCCACCAAATTCACCTCTGGTTCGCATAGATAGACATGAAGGATGGAAACCGTATGATAGTTTCCAAATGGGTCCTGGTGCTCTCCAATCCAATTTTATTGAGAAAAAAAGATTTACACCTGAACCTGACAATTCATCTTCATCCGAGTGGAAATGGGAAGGAACCATTGCTAAAGGTGGGACCCCTATTTGTCGTGCTCGCTGCTTCCCTGTAGGGAAAGTCCTTGATATCGCATTACCTGAATTCTTGGATTGCACTGCAAGAACTAGTCTAGACATGCTTTCGAAACATTACTACCAAGCAGTTGGTGTTTGGGTTGTTTTCTTTGTGCCGGGAAGTGACGCTGACATTGAATTCTACAACGAGTTTATGCATTATCTGGAGGAAAAGCAGCGGGCTGCTGTTTCCAAAGTGGATGACAAGACTACCTTATTTCTTGTACCTCCATCAGAGTTCTCAGAAAAAGTATTGAAGGTACCTGGTAAATTGAGCATATCTGGTGTTATTCTTAGGTTGGAATATCCTGGTTTAAACCAAGGTCATATGCACATTGAAAGAGAAATGAAAAACGAAAACCTCTCGTCCTATAATGAGAACATGTATCCAAATTCATCTTTTCCATCTGCACGTGTACCTACAAACCCACCATCTATTTCAGAATTGGGTAATTCTGGAATCAGAAGCAACCTTTCATTTCTTGGAAACAAATTTCCAGCAGCTCCATTAATATCGAATTCAGCTCATTCTGAAGCTGGCATGTCTGAGTCCTTTGATGGAAGAAATCATGACTATCCATCCGTCCAGCCACGGACATCAGGACCAAACTGGCCTCCTCACAATCCGCATAACTTCAACTCTAACAGAGCTTTACCTTCACATCTATTCAGCGGTGCTGTTGAACCTATTGCCGAGGAGCGTCACCCCAATATGAATGTAAATTCAACTCAACATTCCAGCGGAAATTCTGGTATTCCATTTGGCAATAACAGCATGTCATCTCATCAGGAAATGAGAAATTTCGATCCTTCAACCCCTGTGGGATCTCTGCAACCAGAACAGCTTGCACAACTAGCTGCATCTCTTCTTGAGCAGCAGAGGCATTTGGGAAGCTCTATGAGCACATCTGCAATGTGTGATCCCAGGCAGAACAGATTTAATGAGTCTGAAGCCTCATCCAGACCATCATATGCTGCAGAAAACAACCTGGCGAATTCAGAACTCTCGACATCTCAGTTTGGTCATCACGGTCTACAGCTGCAAAAGCAACAGCAACTGCAACAGCAAATGGTGCCAAATGTGCCACAGTTCTCACAGACGGTTCAAAGAGAATTACCAAGAGAAGTTAATGGAAATCAGCCGTTGCCAGACCATGGCTTGCAGGAAGACGGAGATGCAGATCCACAGCGACGCTTACAAGCAACACTAAAGCTGGCTGCTACTCTACTTCAGCAAATCCATCAAGAAAAAGGGAATTGA 2805 0.4442 MSYRGGRDRDRSRRDYPSRYEDNKGNGGSGRGGGSSSNSGNPPSRHLWVGNLSHNIVEDELAHPFIRFGPLEKIAFQPGRSYAFINFEVDEDAIDAMRSLQGFPLAGNPLRIEFAKADKPSTVIRDEDYSRDERRSAIRGSPFPQREFRGRHGSPEPHYSDKSKLSDKNPEPSEVLWLGFPAQLKVDESILDRAFSPFGEIVKISTFPGRSYAFVRYRNQSSACRAIDALKGKLFGNPRVHICFAKSESGSSSSGKSSFNGPRSPSYKSSGRGGSSENFRQDWSFGGEQNISSPNMLGNWDSRDSDFNNRGSSWAGGAHAYEPRKVGEKGTPLGVSQEFYEHKNSPSRERHFHHSDFPQNYPQRGAFFEDPQGLPEDAPYLHVAKKLKSVSSPPERELPEYAFSELERQKHVFPRQLPDFPHREPFDKSFDAGNFTYGQTFNHPPNSPLVRIDRHEGWKPYDSFQMGPGALQSNFIEKKRFTPEPDNSSSSEWKWEGTIAKGGTPICRARCFPVGKVLDIALPEFLDCTARTSLDMLSKHYYQAVGVWVVFFVPGSDADIEFYNEFMHYLEEKQRAAVSKVDDKTTLFLVPPSEFSEKVLKVPGKLSISGVILRLEYPGLNQGHMHIEREMKNENLSSYNENMYPNSSFPSARVPTNPPSISELGNSGIRSNLSFLGNKFPAAPLISNSAHSEAGMSESFDGRNHDYPSVQPRTSGPNWPPHNPHNFNSNRALPSHLFSGAVEPIAEERHPNMNVNSTQHSSGNSGIPFGNNSMSSHQEMRNFDPSTPVGSLQPEQLAQLAASLLEQQRHLGSSMSTSAMCDPRQNRFNESEASSRPSYAAENNLANSELSTSQFGHHGLQLQKQQQLQQQMVPNVPQFSQTVQRELPREVNGNQPLPDHGLQEDGDADPQRRLQATLKLAATLLQQIHQEKGN* 935
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g2630 934 SMART rrm1_1 46 113 IPR000504 GO:0003723
Psa5g2630 934 SMART rrm1_1 175 243 IPR000504 GO:0003723
Psa5g2630 934 Gene3D - 33 123 IPR012677 -
Psa5g2630 934 SUPERFAMILY RNA-binding domain, RBD 185 275 IPR035979 GO:0003676
Psa5g2630 934 MobiDBLite consensus disorder prediction 890 915 - -
Psa5g2630 934 PANTHER RNA-BINDING PROTEIN SPENITO 13 924 - -
Psa5g2630 934 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 186 239 IPR000504 GO:0003723
Psa5g2630 934 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 47 110 IPR000504 GO:0003723
Psa5g2630 934 MobiDBLite consensus disorder prediction 125 167 - -
Psa5g2630 934 Gene3D - 155 282 IPR012677 -
Psa5g2630 934 PANTHER RNA RECOGNITION MOTIF-CONTAINING 13 924 - -
Psa5g2630 934 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 173 247 IPR000504 GO:0003723
Psa5g2630 934 MobiDBLite consensus disorder prediction 1 41 - -
Psa5g2630 934 Pfam SPOC domain 488 603 IPR012921 -
Psa5g2630 934 MobiDBLite consensus disorder prediction 253 275 - -
Psa5g2630 934 MobiDBLite consensus disorder prediction 1 21 - -
Psa5g2630 934 MobiDBLite consensus disorder prediction 813 841 - -
Psa5g2630 934 SUPERFAMILY RNA-binding domain, RBD 31 123 IPR035979 GO:0003676
Psa5g2630 934 CDD RRM3_Spen 47 116 - -
Psa5g2630 934 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 45 117 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g2630 Psa-Chr5 201179510 201190952 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g2630 46 279 Eukaryotic Initiation Factors Gene Family AT4G34110 23.256 5.32e-06 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g2630 - - gmx:100811668 1199.11