Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g2609 ATGTCTTCTTTACTTTCCATGTACCAATCCAAAGGGGTGGAAGAGAGGAATGAAACAAGAGGCTATAGTGAAGACTTTCAAGCAATGTTAGATAGATTGGAACAAGAAGATAGCTATGAAGATGGTAACTTAATGTTGGAGAAGAAAAGAAGACTTGGTTATGATCAAGTTAAAGCTTTAGAGAAGAGTTTTGAATTGGACAACAAGTTAGAGCCAGAGAGAAGAATGAAGCTAGCTGAAGAATTAGGTTTACAACCTCGACAAGTTTCGATTTGGTTTCAAAATCGTCGAGCTAGATCGAAAACGAAACAATTGGAAAGAGATTATGGTGTTCTTAAGTCCAATTTTGATGTTCTTAAGGTTGAGTATAGTAATCTTCAACAAGAGAATCAAAAGTTAAGAGAGTTGAAAGAGAGAATGTTAAGAGTGGGAAGAAATGAGTTAGAAATAGGAGGTGCAGAAATCAATTCAAGTGGTGTGATTAAAGAAGAAAGTAATGTTGATTGTTCAATGATAAATTTGGTTCATTACTATGATGATTCAAGAGGGTCTCATGAGAGTGTGTTTCAGAATCAGTTTATGAGAATTGAGGAGCAGAATTTCTTTAGTAATGGTGAATTATTCAGTTTCTTCTCTCTTGATCAATCACCTACTTTGTAA 660 0.3455 MSSLLSMYQSKGVEERNETRGYSEDFQAMLDRLEQEDSYEDGNLMLEKKRRLGYDQVKALEKSFELDNKLEPERRMKLAEELGLQPRQVSIWFQNRRARSKTKQLERDYGVLKSNFDVLKVEYSNLQQENQKLRELKERMLRVGRNELEIGGAEINSSGVIKEESNVDCSMINLVHYYDDSRGSHESVFQNQFMRIEEQNFFSNGELFSFFSLDQSPTL* 220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g2609 219 SMART HOX_1 46 107 IPR001356 GO:0003677
Psa5g2609 219 MobiDBLite consensus disorder prediction 1 20 - -
Psa5g2609 219 ProSitePatterns 'Homeobox' domain signature. 78 101 IPR017970 GO:0000981|GO:0006355
Psa5g2609 219 SUPERFAMILY Homeodomain-like 48 114 IPR009057 -
Psa5g2609 219 ProSiteProfiles 'Homeobox' domain profile. 43 103 IPR001356 GO:0003677
Psa5g2609 219 CDD homeodomain 48 104 IPR001356 GO:0003677
Psa5g2609 219 Pfam Homeobox associated leucine zipper 103 134 IPR003106 GO:0006355|GO:0043565
Psa5g2609 219 Coils Coil 116 146 - -
Psa5g2609 219 PRINTS Lambda-repressor HTH signature 74 83 IPR000047 GO:0003677
Psa5g2609 219 PRINTS Lambda-repressor HTH signature 83 99 IPR000047 GO:0003677
Psa5g2609 219 Pfam Homeodomain 49 101 IPR001356 GO:0003677
Psa5g2609 219 Gene3D - 53 101 - -
Psa5g2609 219 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-6 3 204 - -
Psa5g2609 219 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 3 204 IPR045224 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g2609 Psa-Chr5 200440579 200442143 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g2609 11 153 Homeobox Transcription Factor Family AT5G65310 55.063 1.57e-46 154
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Psa5g2609 Homeodomain 2.3e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g2609 K09338 - pop:7486577 204.527
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa5g2609 5 200440579 200442143 Psa5g2609 5 200440579 200442143 ECH