Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g2588 ATGTTGAAATCCCTCAAACGTGGCGAATCGTCTCTTAAAGTGGATGTTTCTTCTCCATCTTTGTCTTCGTGGTCTGCTAAGTCGTTCAGTAAGGACGGTCGAATAATTAGTGTTGGTGACTGTGCGCTCTTCAAACCATCGCAAGATCGCCCACCTTTTATTGGAGTAATTTGTAGTTTGACACTTGGTAAAGAAAGTAAATTGAAGTTAAGTGTTAATTGGCTTTATCGGTCCATTGAAGTAAAACTCAGCAAAGCAGAGCCCTTGGAGGCTGCTCCCAACGAGGTTTTCTACTCCCTTCATAAGAGTGAGATTGATGCTGAATTGCTAATCCATCCTTGTAAAGTTGCATTCCTTCCTAAAGGCGTAAAACTTCCAGCAGGAATTTCATCATTTGTGTGTAGGAGGGTTTATGACACATCGAACAAGTGTTTACGATGGCTAGATGATCAAGAGTATCTTAATGAATGCCAAGAAGTACATAAGTTAGTATATAAGACTTGTGTAGAAATGAATGCAACAATTCAGCCAGGCGGTCGGTCTCCTAAGCCAATGAGTAGCCCAACTTCAACATCACAGGTGAAATCAGTTTCAGATAGTGTGCAGAACAGTACTTCTTCCTTTCCTTCTCATGTTAAAGGGAGGAAAAGGGATAGGGTAGAGCAGGGCTCCGAGCCCATCAAGCGAGAACGTTCAATAAAAATTGAGGATGGACATTCTAGTAATTTTAGGCATGATAGCATTTTGAAGACAGAGATATCCAAAATTACAGAAAAGGGAGGGCTTGTTGATGCCGAAGGAGTCGAAAAGTTTGTGCAGCTGATAGTTCGTGATAGAAATGAAAAGAAGATAGATTTAGCTAGCCGGTCATTGCTTGCAGCTGTTATTGCAGCAACAGATAGATTGGATTGTCTTAGTCAGTTTGTGCAGCAGAGGGGTTTACCTGTATTTGATGAATGGCTCCAAGAGGTCCATAAAGGAAAGAACAGTGATGGTACTGGGTCTAGGGATGGTGATAAATCTGTTGAGGAATTTCTCTCAGTATTACTTCGGGCACTTGATAAGGTCCCGGTCAATCTACAGGCTCTAAAGATGTGCAACATTGGTAAATCTGTGAATCATTTGCGAACCCATAAAAACTTTGAAATTCAGAGGAAAGCAAGAGGTTTAGTTGACACATGGAAGAAACGTGTTGAAGCTGAAATGAATATAAAGGATGGAAAGTCTGGTTCTGGTCCCAATTCCCCCTGTCCTGCCAAATCACGGGTTGCTGATATTGGTCAAGGTGGGAATAGACAGTCAGGCGTGTCATCTGATGTTGCCATGAAGAGTTCAGTTACACAGATTTCTACATCTAAAACTTCTTCCTTGAAGATTGTCCAGGGTGAGAACACGCCTAAATCTGCATCCACATCTGCATTTCCAGGACATGCAAAATCAGTGCCTTCGCCTGTATCTGCAATTACGAGCTTAAAAGATGGACAGCCCCATGTCGCCGCTGTCAATGGCAGTTCTGATATTCCTACCGCCAATGCAAAGGATGAGAAAAGTAGTAGTTCTAGTCAATCTCACAACAACAGTCAATCTTACAACAACAGTCAATCTTGTTCTAGTGACCATGCTAGAACCGGGGGTCTTTCGGGAAAGGAGGATGCCAGAAGCTCTACTGCAATGAGTGCAAATAAGTTATCAGGTGGCTCTTCACGGCATCGGAAATCTATCAATGGACTCCTAGGTTCAACTTCATCCAAAGGGCAAAGGGATAGTCGGTCAAGTAGGAAGTCCTCCTTGCACAAAAGTTTAACTTCAGAGAGAAGATCTCAATCTGGATTAATTGAAAAAGCACTTGATAAAATTTCAAATGAAGGCAATACTCCCAAGCTAATTGTTAAAATTCCAAACCAAGGTAGAAGTCCTGCTCAAAGGGCCAGTGCTGGTTCTTTTGATGAACCTACAATCATGAATGGTAGAGTTGCTTCTCCTGTTCTTTCGGAGAAGCATGATCAGTTTGATCACGGTTTAAAGGAAAAGAGTGACTTTTATCGAGCCAATATTGGCTCTGATGTTAACACTGAATCTTGGCAGAGTAATGATTTTAAAGATGTATTGACTGGCTCTGATGAAGGCGATGGATCCCCTGCTGCAGTTACTGATGAAGAGCACTGTAGGACTGGCAATGATTGTAAGAAAACAGAGGTATCAAAAATTGCTTCCTTGTCATCTGGGAACGGACAAAAAGCTGGGAATTTGCAGGATGCTTCTTACAGTTCCATAAATGCTTTAATTGAAGGTGTTAAGTACTCTGAATCTGATGATGTTGGAATGAATCTTCTTGCTAGTGTGGCTACTGGAGAGATGTTGAAATCTGAATTCTCGACACCAACTGAGTCTCCAGAACGAAAAACTACTGCTGTTGAACAGCTGTGCACAGGCAACACTGCAGTTAAGTCCTCTGAAGAAAATATTGTGCGGGATGAATGCCACTCAAATAATGGTCTTGATGCTGAAAATAAAATACATGGTTCTATATCTGGCGAGATGAATGATGGTAATGATTTTGATTGTCCGGCATCTGGAGGAAAAGCTCTAGGTGAGCTAGATAAGCCTGTTAATGCACGTAGTAAGGATTTGCAACAGGTTACAGGAACTTTTCAAACTGGATTAGAAAGAAAAGGAATACCAGTTGAAAAGCCTGTTCCTGCTTCATTGCGCGCACTTCCTCAATTGCAAGAAGCTAGGGATGGTAACTGTAGTAAGCAGCTCCTGGAAGAGGTTGTGAGTGGAGTGAATGCTGGTGAAACTCTTGGTATTAAGATAAGTAGTGTTGCTGGACTTAAGGTGGAAGCAATTGACAAATTGTTACACACATCTGTGGAAGTGGATGTAAATGGTGATCACAGTGCTGAACGATCAGGCGTCGACAGACTGACGAATCAAAATTCTCCCACTGTTCACAGACAATCCGATTCAGCTAGAGGAACAGATGATGATGTACTCCTATCTCGTGGTGTTGATAATCCTGAAGACTTCAATGAACGAGAGCATGGAAAAAACGGCGATATTTCTGCCGAGAACCATGCTAATGAGGATAAAATGCTAAGAACTGAGTGTGAACATGTTGTCTTGGCTATGCCTGCGAAAAGTGGTTTGTGTTCTAGTGCAACTGATTTTGCTGCTGAGCGTGTGGAGGAAAATTCAGATATAAAAGAGGTTCATGACGAAGATGCTGGACAGGAGCTTCACAAAGCTTCATCTAGCTTTCATTCACAAGAAATGGATAAACAACTGGATTCTAAAGGATCAAAACTGAATGCCATTGAAGCAGAAGAGGCTGAGGAGTGCACCTCTACCACAGCAGACGCTTCTTCTATGTCTGCTGCTGCTGCTGTGTCAGATGCAGATGCAAAGGTTGAATTTGACTTAAATGAGGGGTTCGGTGCCGATGAGGGAAAGCGTGGTGAGTTAAACAGCATTGCCACATCTGGGAGTGCACCTTCTGTTCGATTGATCAGTCCTGTACCATTTTCTGCTTCATCTTTGTCTTATGGTATTCCTGCATCAATCACTGTGGCTGCTGCTGCAAAGGGCCCCTTCATGCTGCCTGAGAATTTATTGAGAAGTAAAGGGGAACTTGGTTGGAAAGGGTCAGCTGCTACTAGTGCATTCCGGCCAGCTGAGCCCAGGAAGGTTATGGAAACACCTCTTGTTACACTAACCACCCCTAATCCTGATACTGCCGCGGGAAAGCAGAGTCGACTACCATTAGATATTGACTTGAATGTGGCCGATGAAAGAATACTAGATGATATTTCATCTTCACCTTGTGCTCGTTACATGAATATTGTATCTCTTGAAGCCAATGATTATAATCCAGTATGCAATAAGATGGCCTCTCCTATTCAGTGTTCTGGTGGTCTTGGACTTGACTTAAACCTAATGGATGAAGCTTCTGATATCGGTAATTGCTCTGCAAGCAGTAGTTATAAGATAGATGTACCTCAAATGCAGGTGAAATCATCATTGGGTGGCCGTTCAAATAGAGAAGTGAGTGCCCACAGGGACTTTGATTTGAATAATGGACCTTCAGTTGAGGAAATCACCACTGAACCATTGATGCCCTCTCAGCATGCCAGGAGCAGTGTGCTAGCACAACCATCTGTGTCTGGACTTAGGATGAGTACTGCCGAGCTAGGTAACTTTTCTTCATGGCTTCCTTCCAGTGGCAACACCTATTCTGCTGTTACGATATCTTCAATTATGCCTGATAGAGGGGATCAGCCCTTTTCAATTGTTGCCCCTAATGGATCACAAAGATTGTTGAGTCCTGCCACTAGTGGCAACCCATTTGGAACTGATATTTATAGGGGGCCAGTATTGTCATCTTCTCGTGCAATGGCATATCCATCTGCTCCATTTGAATACCCTGTTTTCCCTTTTAATTCCAGCTTTCCTCTTCCATCATCGTCATTTTCTGCTGGATCGACTACCTTTGTGTATCCAACATCAGGCAGTCGACCTTGCTTCCCTGTGGTAAATTCGCAGTTGATGGGGCCTGCCAGTACAGTTTCATCCCATTATCCCAGGCCTTATGCCGTTGGCCTTCCAGAAGGTAGCAGTAGTACTAGTGTTGAGACCAGTAGGAAATGGGCAAGACAGGGCTTAGATCTTAATGCTGGACCTGGAGGTTTAGACATAGAGGGGAGAGATGAAATCTCACCTCTTGCATCAAGGCAACTCTCTGTTGCCAGTTTGCAGGTCCTAGCTGAGGAGCATGCAAGGATCCATCTGGCTGGTAGTGTTCTTAAGAGGAAGGAGCCTGATGGTGGGCGGGATGGCTACACCAAACATTCCTCATGGCAATAG 4863 0.4337 MLKSLKRGESSLKVDVSSPSLSSWSAKSFSKDGRIISVGDCALFKPSQDRPPFIGVICSLTLGKESKLKLSVNWLYRSIEVKLSKAEPLEAAPNEVFYSLHKSEIDAELLIHPCKVAFLPKGVKLPAGISSFVCRRVYDTSNKCLRWLDDQEYLNECQEVHKLVYKTCVEMNATIQPGGRSPKPMSSPTSTSQVKSVSDSVQNSTSSFPSHVKGRKRDRVEQGSEPIKRERSIKIEDGHSSNFRHDSILKTEISKITEKGGLVDAEGVEKFVQLIVRDRNEKKIDLASRSLLAAVIAATDRLDCLSQFVQQRGLPVFDEWLQEVHKGKNSDGTGSRDGDKSVEEFLSVLLRALDKVPVNLQALKMCNIGKSVNHLRTHKNFEIQRKARGLVDTWKKRVEAEMNIKDGKSGSGPNSPCPAKSRVADIGQGGNRQSGVSSDVAMKSSVTQISTSKTSSLKIVQGENTPKSASTSAFPGHAKSVPSPVSAITSLKDGQPHVAAVNGSSDIPTANAKDEKSSSSSQSHNNSQSYNNSQSCSSDHARTGGLSGKEDARSSTAMSANKLSGGSSRHRKSINGLLGSTSSKGQRDSRSSRKSSLHKSLTSERRSQSGLIEKALDKISNEGNTPKLIVKIPNQGRSPAQRASAGSFDEPTIMNGRVASPVLSEKHDQFDHGLKEKSDFYRANIGSDVNTESWQSNDFKDVLTGSDEGDGSPAAVTDEEHCRTGNDCKKTEVSKIASLSSGNGQKAGNLQDASYSSINALIEGVKYSESDDVGMNLLASVATGEMLKSEFSTPTESPERKTTAVEQLCTGNTAVKSSEENIVRDECHSNNGLDAENKIHGSISGEMNDGNDFDCPASGGKALGELDKPVNARSKDLQQVTGTFQTGLERKGIPVEKPVPASLRALPQLQEARDGNCSKQLLEEVVSGVNAGETLGIKISSVAGLKVEAIDKLLHTSVEVDVNGDHSAERSGVDRLTNQNSPTVHRQSDSARGTDDDVLLSRGVDNPEDFNEREHGKNGDISAENHANEDKMLRTECEHVVLAMPAKSGLCSSATDFAAERVEENSDIKEVHDEDAGQELHKASSSFHSQEMDKQLDSKGSKLNAIEAEEAEECTSTTADASSMSAAAAVSDADAKVEFDLNEGFGADEGKRGELNSIATSGSAPSVRLISPVPFSASSLSYGIPASITVAAAAKGPFMLPENLLRSKGELGWKGSAATSAFRPAEPRKVMETPLVTLTTPNPDTAAGKQSRLPLDIDLNVADERILDDISSSPCARYMNIVSLEANDYNPVCNKMASPIQCSGGLGLDLNLMDEASDIGNCSASSSYKIDVPQMQVKSSLGGRSNREVSAHRDFDLNNGPSVEEITTEPLMPSQHARSSVLAQPSVSGLRMSTAELGNFSSWLPSSGNTYSAVTISSIMPDRGDQPFSIVAPNGSQRLLSPATSGNPFGTDIYRGPVLSSSRAMAYPSAPFEYPVFPFNSSFPLPSSSFSAGSTTFVYPTSGSRPCFPVVNSQLMGPASTVSSHYPRPYAVGLPEGSSSTSVETSRKWARQGLDLNAGPGGLDIEGRDEISPLASRQLSVASLQVLAEEHARIHLAGSVLKRKEPDGGRDGYTKHSSWQ* 1621
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g2588 1620 MobiDBLite consensus disorder prediction 1065 1098 - -
Psa5g2588 1620 MobiDBLite consensus disorder prediction 549 586 - -
Psa5g2588 1620 MobiDBLite consensus disorder prediction 1006 1025 - -
Psa5g2588 1620 MobiDBLite consensus disorder prediction 964 1001 - -
Psa5g2588 1620 CDD TFIIS_I 336 399 - -
Psa5g2588 1620 SMART TFS2_5 321 400 IPR003617 GO:0005634
Psa5g2588 1620 ProSiteProfiles TFIIS N-terminal domain profile. 322 401 IPR017923 -
Psa5g2588 1620 MobiDBLite consensus disorder prediction 501 609 - -
Psa5g2588 1620 MobiDBLite consensus disorder prediction 587 601 - -
Psa5g2588 1620 Pfam BAH domain 36 145 IPR001025 GO:0003682
Psa5g2588 1620 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 268 402 IPR035441 -
Psa5g2588 1620 MobiDBLite consensus disorder prediction 176 236 - -
Psa5g2588 1620 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 303 413 IPR035441 -
Psa5g2588 1620 SMART BAH_4 34 149 IPR001025 GO:0003682
Psa5g2588 1620 Gene3D - 23 257 IPR043151 -
Psa5g2588 1620 MobiDBLite consensus disorder prediction 179 210 - -
Psa5g2588 1620 PANTHER BAH AND TFIIS DOMAIN-CONTAINING PROTEIN-RELATED 11 1620 - -
Psa5g2588 1620 MobiDBLite consensus disorder prediction 428 481 - -
Psa5g2588 1620 MobiDBLite consensus disorder prediction 973 988 - -
Psa5g2588 1620 ProSiteProfiles BAH domain profile. 34 149 IPR001025 GO:0003682
Psa5g2588 1620 PANTHER BAH AND TFIIS DOMAIN-CONTAINING PROTEIN-RELATED 11 1620 - -
Psa5g2588 1620 MobiDBLite consensus disorder prediction 627 649 - -
Psa5g2588 1620 MobiDBLite consensus disorder prediction 502 542 - -
Psa5g2588 1620 MobiDBLite consensus disorder prediction 211 236 - -
Psa5g2588 1620 Pfam TFIIS helical bundle-like domain 349 398 IPR017923 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g2588 Psa-Chr5 198579724 198587445 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR IWS1 Psa5g2588 BAH 2.5e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g2588 - - ccaj:109810746 2167.12