Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g2582 ATGAGAATAAAAAGCGTCGGCGGTGGCCGCCGGCGTAGCATCACGCCTTCCGTAACTCCCTCCGCCTCTCCCATTCCTCTTCTCTCCACCGCCCAGGACGACCACAATGCAACCGTCTACGACAGCGACAGCACCGGCGATCACACGCACGCTCCACTTCCCGATTTCGTTCCCGATTCCGAACCACCAGATTCCTTAGACGATGACATTTGCATTACTTGCAACCAAGCCGGAGGACCATTGCTAATATGTACCCAAACCGATTGCCCCGTTATAGTCCACGCCACCTGCATCGGTTCCGAACCTAAGTTCGATGATTCTGGAAACTTCTTCTGTCCCTACTGCTCCTACAAGCGAGCGTTGAAGAAAACTAGAGAATTAAGAGAAAAAACGATTTTAGCTAAGAAAACTCTTTCGAGCTTTTTGGAAAAAAGCCAAACAGTGCGTAAGGATGATGAGGAAGAACACATTGCCGAACCAGAACCGGTTCAGGATCATCCGAACCGGGATGAACCGGATGTTTCTGATTCTGAGGAAAGAAAAGAACTAAATAGTAATGAAAATGGTAAAGATAAAGGAAATGTTTCTGTTTCAGGTAGTTCAGTGAGTGAAATTAAGGATTCCGATTCTAATTCTATCTTGGTGAAGAACGGTCATGCCAATGCCAACAATGCCAAAGGCAAACACAAGGTTGCTTATGTGAAAAAATCATTGTTACCGGAACGAAAAACTGGTGGTGGCGGCGTGGATGAGGAGGAAGTTACCAGTTCCAGAACGTTAAGCATACAAAAGCAAGTGACGAAGTCGAATTTGATGACTGGAAAACGTAGGAGATTGCTTTGGACAGATGAAGAAGAAAAAGCTCTCAAGGAAGGAGTGTCGAAGTACTCAACTGAAAAGCAGAATATTCCTTGGAGGAAAATTTTAGAATTTGGTTGCCGTGTGTTTGATAAGACTCGGACTCCTGTTGATCTCAAGGATAAGTGGAAAAACATTATCTCCAAGGAAGGTAAAATTACTAAGTTATACTCAGATATTTATAATAGTTGGTATTTTAGGATTATTGCGGAGTACCTTTTTGATGATTCCATATAA 1095 0.4365 MRIKSVGGGRRRSITPSVTPSASPIPLLSTAQDDHNATVYDSDSTGDHTHAPLPDFVPDSEPPDSLDDDICITCNQAGGPLLICTQTDCPVIVHATCIGSEPKFDDSGNFFCPYCSYKRALKKTRELREKTILAKKTLSSFLEKSQTVRKDDEEEHIAEPEPVQDHPNRDEPDVSDSEERKELNSNENGKDKGNVSVSGSSVSEIKDSDSNSILVKNGHANANNAKGKHKVAYVKKSLLPERKTGGGGVDEEEVTSSRTLSIQKQVTKSNLMTGKRRRLLWTDEEEKALKEGVSKYSTEKQNIPWRKILEFGCRVFDKTRTPVDLKDKWKNIISKEGKITKLYSDIYNSWYFRIIAEYLFDDSI* 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g2582 364 MobiDBLite consensus disorder prediction 1 47 - -
Psa5g2582 364 Gene3D - 281 349 - -
Psa5g2582 364 MobiDBLite consensus disorder prediction 12 45 - -
Psa5g2582 364 ProSiteProfiles Myb-like domain profile. 273 333 IPR001005 -
Psa5g2582 364 CDD SANT_TRF 281 333 - -
Psa5g2582 364 ProSiteProfiles Zinc finger PHD-type profile. 68 118 IPR019787 -
Psa5g2582 364 MobiDBLite consensus disorder prediction 189 207 - -
Psa5g2582 364 ProSitePatterns Zinc finger PHD-type signature. 71 115 IPR019786 -
Psa5g2582 364 SUPERFAMILY FYVE/PHD zinc finger 60 124 IPR011011 -
Psa5g2582 364 SMART PHD_3 70 116 IPR001965 -
Psa5g2582 364 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 31 237 - -
Psa5g2582 364 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 258 338 - -
Psa5g2582 364 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN 258 338 - -
Psa5g2582 364 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN 31 237 - -
Psa5g2582 364 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 273 337 IPR017930 -
Psa5g2582 364 SUPERFAMILY Homeodomain-like 276 351 IPR009057 -
Psa5g2582 364 CDD PHD_SF 70 115 - -
Psa5g2582 364 MobiDBLite consensus disorder prediction 145 188 - -
Psa5g2582 364 SMART sant 277 335 IPR001005 -
Psa5g2582 364 MobiDBLite consensus disorder prediction 143 207 - -
Psa5g2582 364 Pfam Myb-like DNA-binding domain 281 332 IPR001005 -
Psa5g2582 364 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 59 161 IPR013083 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g2582 281 332 Single Myb Histone (SMH) Gene Family AT5G67580 54.545 4.19e-07 49.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Psa5g2582 Myb_DNA-binding 2.3e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g2582 - - mtr:MTR_3g082160 412.92