Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g2578 ATGAGTTATAAATGTGGTGGTATTGGATTAGCTGCCTCGGTTTTTACCAAGATGGATGCTCGAAAAACAACAAGTGTCGGTTCTTGGAACACTTTCATAGCTGCTTATCTTCAAAATGGACAGGCTTTTGAAGCTTTCGACCTTTTTCGTCAAATGATATGTAGAAATGTTTTGTCTAAATTGGTAACATTGGCCAATGCTATTCTGTGTTGTGGTGAATTGAATTATTTTCGTCGAGGGATGAGTATTCATGGATACATGATCACGATGGAGGCATACTTAATTTACAAGAAAAAAAACAATTTAACATGTGTGATCCAAGCAGAAAGCGTTCTTCCTAGACATGACCAGAGACACGCAATTTCCAAGTCATACTTCTTACAATTTCAGTGTCAGTACCGGACAGCCCTCCATTTTGTGATGCCAAAGGTTTTGATAGCCGCTGTAGCAACCACTCAATGTTGTGAAATCTGCAAGTGCAATTACAGGAAAAAAAGTGATTTTGAAAAGAAGACTTGGCAGTGGGCATTAAAGAGCATCCTACACACCATCCATAACACCTGCCAGCTTATCAAGGTTCTAGCTTTTGCTGCAGGATCATTTGTTTCTATGCCAGCATCTCAGAGAGAAGCAGTTGAAGCATTGATTCAGGAACTTCCAAAGTTCATGTTAAAGGTTGTTCCTACGGATTGCAGTGAATGCCCCATCTGCTTAGAAGAGTTCCGTGTTGGGAATGAGGTTCATGGCTTGCCTTGTGCACACAATTTTCATGTTGAATGCATTGACGAGTGGCTCAGGCTGAATGTGAAATGTCATCGTTGCCGTTGCTCAGTGTTTCCAAATCCTGATCTTAGTGCCCCGTCCAATCTCCGTCCAGATTTTGAGCGATCTTCTGCCAGTGTTGTGACAACAACTAGCTATGCCAATTGTCTAAAATTTAACAAGAAAAGAAATGCTTATCATGATTTGGCAATGGCTAAGCTCAAAGAAGGGAATGTTAATGCTGCTTCAGAGCTATTTCAGAGAGCAGTGCATATCACTCCTCTTATGGCACATAAGCTCATTCAGACTTTGAAATCAGAGAACATTGAGTTTGTTGTAGCTCCACCAATATTCAGTCTACAAGGAAGCCTACCGAGAATCCAAAAGCAGTTGCAAAATTTGAGTGGCGAGCAAAAGTGA 1182 0.4095 MSYKCGGIGLAASVFTKMDARKTTSVGSWNTFIAAYLQNGQAFEAFDLFRQMICRNVLSKLVTLANAILCCGELNYFRRGMSIHGYMITMEAYLIYKKKNNLTCVIQAESVLPRHDQRHAISKSYFLQFQCQYRTALHFVMPKVLIAAVATTQCCEICKCNYRKKSDFEKKTWQWALKSILHTIHNTCQLIKVLAFAAGSFVSMPASQREAVEALIQELPKFMLKVVPTDCSECPICLEEFRVGNEVHGLPCAHNFHVECIDEWLRLNVKCHRCRCSVFPNPDLSAPSNLRPDFERSSASVVTTTSYANCLKFNKKRNAYHDLAMAKLKEGNVNAASELFQRAVHITPLMAHKLIQTLKSENIEFVVAPPIFSLQGSLPRIQKQLQNLSGEQK* 394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g2578 393 SUPERFAMILY RING/U-box 233 284 - -
Psa5g2578 393 SUPERFAMILY PIN domain-like 314 369 IPR029060 -
Psa5g2578 393 SMART ring_2 234 274 IPR001841 -
Psa5g2578 393 ProSiteProfiles TPR repeat profile. 317 350 IPR019734 GO:0005515
Psa5g2578 393 ProSiteProfiles Zinc finger RING-type profile. 234 275 IPR001841 -
Psa5g2578 393 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 200 280 IPR013083 -
Psa5g2578 393 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SIS3 202 338 IPR044793 GO:0004842|GO:0010182
Psa5g2578 393 Pfam PPR repeat 28 57 IPR002885 -
Psa5g2578 393 TIGRFAM PPR: pentatricopeptide repeat domain 28 57 IPR002885 -
Psa5g2578 393 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 25 59 IPR002885 -
Psa5g2578 393 Gene3D Tetratricopeptide repeat domain 1 144 IPR011990 GO:0005515
Psa5g2578 393 Pfam Ring finger domain 233 275 IPR001841 -
Psa5g2578 393 Gene3D - 294 370 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g2578 Psa-Chr5 198120136 198122626 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g2578 207 320 C3H Transcription Factor Family AT3G47990 64.912 7.28e-45 155
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g2578 K16284 - nnu:104593208 187.193