Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g2554 ATGAAGAAGGTTTCTCTTTATGCTTGTTTATTACTCAACTTGAGTCTTTTGGTTATTTTTCCATATAGCAAAGCTAGTCAAGCTGATAAACTTAAAGAGTTGATTCTGTCCAAAAGCTCACAGGATCCTCCAAAGACTCTTTCTTGGAAAGAAGAAGATGCATTGAAAACACTATCTTCTTCTTCTTCTTCTATTGCTTATGTTGTACCTCCTCAAGAGGGGCAAAGGCTAGCTGACAGGATTGTCACATTGCCTGGTCAACCCTATGGAGTGAACTTTGACCAATACTCAGGCTATGTCACAGTTGATCATGAGGCTGGAAAAGAACTTTTCTATTATTTTGTGGAGTCTCCATATAATTATTCAACTAAACCTTTAATATTGTGGCTCAATGGAGGACCTGGTTGTTCCTCACTAGGTTATGGAGCCTTTGAGGAGCTAGGACCCTTCAGAATCAACTCTGACGGCAAAACTCTATACCGTAACCCATATGCTTGGAATGAAGTTGCAAATATACTTTTCTTGGAATCTCCAGCAGGAGTAGGCTTCTCGTACTCAAACACTACTTCTGACTACGAAAATTCCGGAGATAAGACAACTGCGAGGGATGCTTATGTCTTCCTCATCAACTGGCTGGAGAGGTTTCCACAGTACAAAACTAGAGATTTTTACATAACTGGAGAGAGTTATGCTGGTCATTATGTTCCTCAACTTGCATCCACTATTCTTCGCAACAATAAACTCTATAGCCAAATCATTATTAACCTCAAAGGAATTTCCATAGGAAATGCTTGGATTGATGATGCTACAAGTTTAAAAGGGATATTTGATTACCTTTGGACTCATGCTTTGAATTCAGATCAAACTCATGAGTTGATTGACAAGTACTGTGACTTCACTTCTGAAAATGTATCAGCAATATGTACCAATGCAACAATAAGAGCTTCAACTGAGATAGGAAACATAGATTTCTATAACATCTATGCTCCACAATGTCACGATTCTTCTCTCAAAAATGGCTCAACTGGTTATGTAAGTAATGATTTTGACCCTTGTTCTGATTACTATGGTATTGCCTATCTAAATAGACCAGAGGTGCAAAAGGCTCTTCATGCAAAACCTACAAATTGGAGCCATTGCAGTCGTGTTATTCGGACCTGGAAAGACAGTCCGGTTACAATTCTTCCCACCATTAAGTACCTCATTGACAGTGGCATTAAATTATGGATATACGGTGGTGATACCGATTCAGTGGTTCCAGTTACATCTTCAAGGTATTCAATCAACACTCTTAAGCTCCCTATCAACTCCGCTTGGCGTCCATGGTATTCCGGAAAAGAGATTGGAGGGTATGTTGTGGGATACAAAGGATTGACATTTGTTACAGTAAGAGGAGCAGGACATCTTGTTCCAAGCTGGCAACCGCAACGAGCTTTGACTTTGATCTCATCGTTCGTCTATGGAATCTTGCCTCCTGTTTCTCCATCAAATTAA 1494 0.3969 MKKVSLYACLLLNLSLLVIFPYSKASQADKLKELILSKSSQDPPKTLSWKEEDALKTLSSSSSSIAYVVPPQEGQRLADRIVTLPGQPYGVNFDQYSGYVTVDHEAGKELFYYFVESPYNYSTKPLILWLNGGPGCSSLGYGAFEELGPFRINSDGKTLYRNPYAWNEVANILFLESPAGVGFSYSNTTSDYENSGDKTTARDAYVFLINWLERFPQYKTRDFYITGESYAGHYVPQLASTILRNNKLYSQIIINLKGISIGNAWIDDATSLKGIFDYLWTHALNSDQTHELIDKYCDFTSENVSAICTNATIRASTEIGNIDFYNIYAPQCHDSSLKNGSTGYVSNDFDPCSDYYGIAYLNRPEVQKALHAKPTNWSHCSRVIRTWKDSPVTILPTIKYLIDSGIKLWIYGGDTDSVVPVTSSRYSINTLKLPINSAWRPWYSGKEIGGYVVGYKGLTFVTVRGAGHLVPSWQPQRALTLISSFVYGILPPVSPSN* 498
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g2554 497 ProSitePatterns Serine carboxypeptidases, serine active site. 225 232 IPR018202 GO:0004185
Psa5g2554 497 Gene3D alpha/beta hydrolase 76 334 IPR029058 -
Psa5g2554 497 Pfam Serine carboxypeptidase 85 486 IPR001563 GO:0004185|GO:0006508
Psa5g2554 497 Gene3D - 352 386 - -
Psa5g2554 497 Gene3D - 394 488 - -
Psa5g2554 497 PANTHER CARBOXYPEPTIDASE 19 493 - -
Psa5g2554 497 SUPERFAMILY alpha/beta-Hydrolases 78 490 IPR029058 -
Psa5g2554 497 ProSitePatterns Serine carboxypeptidases, histidine active site. 458 475 IPR033124 GO:0004185
Psa5g2554 497 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 19 493 IPR001563 GO:0004185|GO:0006508
Psa5g2554 497 PRINTS Carboxypeptidase C serine protease (S10) family signature 162 174 IPR001563 GO:0004185|GO:0006508
Psa5g2554 497 PRINTS Carboxypeptidase C serine protease (S10) family signature 175 185 IPR001563 GO:0004185|GO:0006508
Psa5g2554 497 PRINTS Carboxypeptidase C serine protease (S10) family signature 211 236 IPR001563 GO:0004185|GO:0006508
Psa5g2554 497 PRINTS Carboxypeptidase C serine protease (S10) family signature 458 471 IPR001563 GO:0004185|GO:0006508
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g2554 Psa-Chr5 196541961 196544241 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g2554 349 488 Calmodulin-binding Proteins AT2G22960 28.859 1.98e-11 61.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g2554 K16297 - gmx:100790394 810.831