Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g2544 ATGTTAAAGAAGAAGTCTAGTTTGGGTCGTCAAAAAATTCCTATTGAAAAAATACCTAAGAAAAGTCATTTACAAGTTACATTTTCTAAACGCCGATCAGGGTTGTTCAAAAAAGCTAGCGAGCTTTGCACTCTATGTGGTGTGGAGATTGCAATCGTAGTTTTTTCTCCGGCTGATAAAGCATTCTCATTCGGTCATCCTGAAGTTGAGTCCATCGTTGATCGTTATCTGAGTCGTAATCTTCCACAAGAATCTAGCACCCTCCAACTTGTCGAGGCTCATAGAAATGCCAATGTTCGCGATCTGAACGCGCAACTAACTCAACTTCTAAGCCATCTTGAGATTGAAAAGAAGCAAGGAGAGGAGATAGATCATGTGAGGAAAGCTAGACAGGTGCAAAACTGGTGGGAAAATGCTATTGATGAACTTGGCTTGAATGAATTGGTCCAATTAAAGGTTTCTATCGAAGACCTAAAGAAAAACATCGGAAAAATTGCTAACAAATGCATGATAGAACAATCTAATATGTTTTCATCAAATATTGGTGCTAATGGATTTGGACGTTACAATACCTTTGAGAACAAATCAGGTGGGGGAATTAATATGGCTTCTACACTTCCTAATACCTATAATTATCTTGGTTTTCGACATGGATATCTTTGA 663 0.3801 MLKKKSSLGRQKIPIEKIPKKSHLQVTFSKRRSGLFKKASELCTLCGVEIAIVVFSPADKAFSFGHPEVESIVDRYLSRNLPQESSTLQLVEAHRNANVRDLNAQLTQLLSHLEIEKKQGEEIDHVRKARQVQNWWENAIDELGLNELVQLKVSIEDLKKNIGKIANKCMIEQSNMFSSNIGANGFGRYNTFENKSGGGINMASTLPNTYNYLGFRHGYL* 221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g2544 220 Coils Coil 96 119 - -
Psa5g2544 220 Gene3D - 88 180 - -
Psa5g2544 220 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL62 7 181 - -
Psa5g2544 220 Coils Coil 148 168 - -
Psa5g2544 220 SUPERFAMILY SRF-like 9 83 IPR036879 GO:0003677|GO:0046983
Psa5g2544 220 Gene3D - 20 87 IPR036879 GO:0003677|GO:0046983
Psa5g2544 220 PRINTS MADS domain signature 10 30 IPR002100 GO:0003677|GO:0046983
Psa5g2544 220 PRINTS MADS domain signature 30 45 IPR002100 GO:0003677|GO:0046983
Psa5g2544 220 PRINTS MADS domain signature 45 66 IPR002100 GO:0003677|GO:0046983
Psa5g2544 220 PANTHER MADS BOX PROTEIN 7 181 - -
Psa5g2544 220 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 17 64 IPR002100 GO:0003677|GO:0046983
Psa5g2544 220 CDD MADS_MEF2_like 9 77 IPR033896 GO:0000977|GO:0045944
Psa5g2544 220 SMART madsneu2 8 67 IPR002100 GO:0003677|GO:0046983
Psa5g2544 220 ProSiteProfiles MADS-box domain profile. 8 68 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g2544 Psa-Chr5 193206232 193206894 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g2544 5 181 Type I MADS-box Gene Family AT5G60440 51.667 1.59e-57 182
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Psa5g2544 SRF-TF 3.3e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g2544 - - gmx:100793705 311.227