Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g2532 ATGAATATAAGGAAAAATGATGTGATGATGAGTAGTGTTCCACAAACTGCAAATTCTTCTCCTCCTCCTCCAAATATGTATCCAGAAGAACTTCAACTTAAGCTTTATCAAGCTTTCATATTTTCAATTCCTATACTTTTTTCTATTATTCTTTTTCTTCTTTTTTACTTGTTTTATCTCAAGAGAAGAGCTTCTTCTTTCTCTCCACACTTGCTTCCAAGGATTCATCCTCCAACTACCTATCGTTATTATTCCTCTAACTCCTCACCTCGTCGTTTGGATTTTGCTGTGCAATTCTTGGACAAACTTCCTAGAATTTTGTTTGATGAGGATTTACAAGCAAGGGATTCAATATGTTGTGTTTGTTTGGGAGAATTTGAGTTGAAAGAAGAGTTGCAACTGATTCCAAATTGCAAGCATGTGTTCCACATTGATTGCATACATCATTGGCTACAAACAAATTCAACTTGTCCACTTTGTAGATGTTCCATCATTCCCACTACAACCAAGTTCCTTAATCCACCACCTCCTATTAATATTATAATATCAGACCCACCACATCAAGGTCCTATGGATTCTGATTCTCCATTACAAATTTCATCATTAGAAGATGAAGCTGCTGGTGCTTCCACAAATGTTGTGTCAAGAGAATGA 654 0.3593 MNIRKNDVMMSSVPQTANSSPPPPNMYPEELQLKLYQAFIFSIPILFSIILFLLFYLFYLKRRASSFSPHLLPRIHPPTTYRYYSSNSSPRRLDFAVQFLDKLPRILFDEDLQARDSICCVCLGEFELKEELQLIPNCKHVFHIDCIHHWLQTNSTCPLCRCSIIPTTTKFLNPPPPINIIISDPPHQGPMDSDSPLQISSLEDEAAGASTNVVSRE* 218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g2532 217 Pfam Ring finger domain 119 161 IPR001841 -
Psa5g2532 217 SMART ring_2 119 160 IPR001841 -
Psa5g2532 217 ProSiteProfiles Zinc finger RING-type profile. 119 161 IPR001841 -
Psa5g2532 217 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 18 173 - -
Psa5g2532 217 MobiDBLite consensus disorder prediction 186 217 - -
Psa5g2532 217 MobiDBLite consensus disorder prediction 1 16 - -
Psa5g2532 217 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 81 166 IPR013083 -
Psa5g2532 217 MobiDBLite consensus disorder prediction 193 217 - -
Psa5g2532 217 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RHA4A-RELATED 18 173 - -
Psa5g2532 217 SUPERFAMILY RING/U-box 97 168 - -
Psa5g2532 217 MobiDBLite consensus disorder prediction 1 23 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g2532 Psa-Chr5 192593712 192595687 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g2532 18 166 C3H Transcription Factor Family AT4G10150 39.216 9.32e-34 119
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g2532 K19039 - aprc:113858113 248.44
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa5g2532 5 192593712 192595687 Psa5g2532 5 192593712 192595687 ECH