LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Psa5g2503	ATGGCTTACAATTTGAAACAGAAACTATTCTCAATTACTCTTCTCTTCTGCATAATCTTTTCACCAACAGAAACAGCATCAACATTCAGCCATTACAATTGCACAAACATTCAAACATTTAATCCCAAAAGCACTTACAAAACCAACTTAAACACACTCTTATCAACACTTTCATCCAAAGCTTCTGATACACTCAACCATGGCTACTATAACACTAGTATAATTAGTACTACTGATGAAACAGAAGACACTGTCTATGGTTTATTTATGTGCATTGGATACACAAATCATTGTGGTGAATGTGTAAGAAACTCTACCAAAACTCTTACCTCAATGTGTGATTCTAAAGAAGCTATTATTTGGTCTGACGAATGCTTGGTTCGTTATTCCAATCGATCTTTCTTCGACGCTGTGGAAGAGTCTCCAGCATGGTGTGTAAAGGACTTAATTGATTATCAAGGTCCGTTGGATGGATTCAACAGAATGCTAAGTTCCTTGATGGTGGATCTTGTGACACAAGCAAATGAAGATTCGAAGGGAAAATTTAACAAAATTGTTCTCAAGAGAGCGATTTTCTACGAGGATAGATTCTTGTATGGACTTGCTCAGTGTGTACCGAATCTCTCGAATGATGATTGCATGAAGTGTTTGAAGGATGCTGTTGAATATCTTCAAACTTCATGTGCTAGAGGAAAGATTAGAGGAAGTGTTTTATATCCAAGTTGTATTGTTAGATATGATCCTTACCCATTTTTTGCATTAGCTAGAGGACAAGGAAAGCAAAATAGAGGACACTCAAATTTCATAATTGTTCATGTTCTTGCTCCTATCACGATCTTCTCTGTCACGGTTTTCTTTTTCACGTATTATGTGCTATGTCGAAGAGCGAGGAAGAATCTCACGTATCACAGAGAAAATTTTGGAGAAGACATTTCATCAGAAGTACACTCTCTGCAATTTAATTTCGATATGATTCGGCTAGCGACAAACAAGTTCTCTGATGATAACAAGATAGGAGAAGGTGGTTTTGGAGATGTTTATAAGGGAATGTTTCCGAACGGATTTGAAATAGCAGTGAAGAGGCTCATAAGAAATTCAAGTCAAGGAGCTGTGGAATTCAAGAACGAAGTGTTGTTAATAGCAAAACTTCAGCACAGAAATCTTGTGAGACTTTTAGGATTTTGCATTCAAAGAAACGAGAAGATACTCATTTATGAATATATGCACAACAAAAGCCTTGATTACTATCTATTCAGTCCGGAAAACCATAGAAAGTTAACTTGGCATGCACGTTACAAGATTATAAGAGGGATTGCACGAGGCATTCTTTATCTACATGAGGATTCTCATTTGAAAATCATTCATTGTGATCTTAAACCGAGCAATATTCTGTTGGATGACAAAATGAATGCGAAGATATCGGATTTTGGCTTGGCGAGGATTGTTGCGATAGATCAAATGCAAGGAAACACTAGTATAATTGCGGGGACATACGGCTATATGTCTCCCGAATATGCAATGCTTGGGCAGTTCTCTGAGAAATCTGATGTATTCAGTTTTGGAGTCATAATTCTTGAGATTGTTAGTGGAAAAAGAAATGTTGATTATAATGGAGTAAATTCCATCGATGACCTCGTGAGCCACGCTTGGAAGAAATGGTGGGAAAATAGGCAATTGGAACTATTGGATTCTGCATTGGCATACTCATTTTCAGAAACAGAAGTAAATAGGTGCGTTCAAATAGGTCTATTATGCGTGCAAGAAAATCCAGATCAGAGGCCAACAATGGCAACAATTGCTTTGTATTTCAACTGTGATTCAATAGATCTTCCACTACCTCAACAGCCAGCATTTTACATGCGCGGAAAAATCGAATCAAAGGTGGCTAGTAAAATATCGATGACGGGTCGACCTAGGAGTTATTCAGTGACAAGGTTTTAA	1941	0.3735	MAYNLKQKLFSITLLFCIIFSPTETASTFSHYNCTNIQTFNPKSTYKTNLNTLLSTLSSKASDTLNHGYYNTSIISTTDETEDTVYGLFMCIGYTNHCGECVRNSTKTLTSMCDSKEAIIWSDECLVRYSNRSFFDAVEESPAWCVKDLIDYQGPLDGFNRMLSSLMVDLVTQANEDSKGKFNKIVLKRAIFYEDRFLYGLAQCVPNLSNDDCMKCLKDAVEYLQTSCARGKIRGSVLYPSCIVRYDPYPFFALARGQGKQNRGHSNFIIVHVLAPITIFSVTVFFFTYYVLCRRARKNLTYHRENFGEDISSEVHSLQFNFDMIRLATNKFSDDNKIGEGGFGDVYKGMFPNGFEIAVKRLIRNSSQGAVEFKNEVLLIAKLQHRNLVRLLGFCIQRNEKILIYEYMHNKSLDYYLFSPENHRKLTWHARYKIIRGIARGILYLHEDSHLKIIHCDLKPSNILLDDKMNAKISDFGLARIVAIDQMQGNTSIIAGTYGYMSPEYAMLGQFSEKSDVFSFGVIILEIVSGKRNVDYNGVNSIDDLVSHAWKKWWENRQLELLDSALAYSFSETEVNRCVQIGLLCVQENPDQRPTMATIALYFNCDSIDLPLPQQPAFYMRGKIESKVASKISMTGRPRSYSVTRF*	647

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Psa5g2503	646	Gene3D	Phosphorylase Kinase; domain 1	294	407	-	-
	Psa5g2503	646	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	453	465	IPR008271	GO:0004672\|GO:0006468
	Psa5g2503	646	ProSiteProfiles	Protein kinase domain profile.	332	603	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Psa5g2503	646	CDD	STKc_IRAK	338	600	-	-
	Psa5g2503	646	ProSiteProfiles	Gnk2-homologous domain profile.	140	251	IPR002902	-
	Psa5g2503	646	Pfam	Protein tyrosine and serine/threonine kinase	335	600	IPR001245	GO:0004672\|GO:0006468
	Psa5g2503	646	Gene3D	Transferase(Phosphotransferase) domain 1	408	607	-	-
	Psa5g2503	646	SMART	serkin_6	332	603	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Psa5g2503	646	SUPERFAMILY	Protein kinase-like (PK-like)	316	621	IPR011009	-
	Psa5g2503	646	PANTHER	RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8	27	258	-	-
	Psa5g2503	646	PANTHER	RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8	265	626	-	-
	Psa5g2503	646	ProSiteProfiles	Gnk2-homologous domain profile.	28	134	IPR002902	-
	Psa5g2503	646	ProSitePatterns	Protein kinases ATP-binding region signature.	338	360	IPR017441	GO:0005524
	Psa5g2503	646	Gene3D	-	151	251	IPR038408	-
	Psa5g2503	646	Gene3D	-	26	134	IPR038408	-
	Psa5g2503	646	PANTHER	CYSTEINE-RICH RECEPTOR-KINASE-LIKE PROTEIN	265	626	-	-
	Psa5g2503	646	PANTHER	CYSTEINE-RICH RECEPTOR-KINASE-LIKE PROTEIN	27	258	-	-
	Psa5g2503	646	Pfam	Salt stress response/antifungal	157	247	IPR002902	-
	Psa5g2503	646	Pfam	Salt stress response/antifungal	34	131	IPR002902	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Psa5g2503	Psa-Chr5	191332663	191335949	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Psa5g2503	9	627	Receptor kinase-like Gene Family	AT4G05200	41.911	1.18e-169	499

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_DLSV	Psa5g2503		PK_Tyr_Ser-Thr	3.8e-46	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Psa5g2503	-		-	mtr:MTR_3g079850	1083.55