Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g2495 ATGGACAAAGAAGGTGTTGAACTTCAAACTGATGCAGGTTCAATGATAGGAGATTCTTTACTTCTTCATAACCAGGTTTCAAGAAGACCTAGTCTTTCCTCTTTACAGATACCAACAAGGTCACTAGAAAGTGCATTTTCTTCTTCTACTAAGACAGATGGTCCTACATTATCAAGTCCGGGTTCCACTAGAGGACTGCCACCAAGGCCACATTCTACTAAAGTCAAATCCTCTATGAGAAGTTTGCTTTCTGATAGGAGCTTTAGGACAAAAACTTGTTCACAAGATTGCGAAAAGACAGTTTTGATTGTTCCAGATACTTTATCATCGAATGGTCCTTTGGATAAGCCTTCTACTTCGAGGTCGCTTTCGCTTAACAAGATTTTGTTCCCTTCATCGACAAAAGCTGCACATTCATTACCGGTTACTCCAGTTGCAAATTCAGGTGGAGATAATGTAGATGGAACGCGTGTAGAGGGTGATTCTGATTTAAATAAAGTGAAAGTGAATAAGCATATGACTCGATCATTTTCAGTTCCGGTTAATGTTAAAGCCACTAACTTAAGGCCTACAGATTCAAGGCGCCTGGTTCGTGTAATTTCAGCAAGACCACATACAGCACCTTCTGATGGCATTTCAACTCGCAGTGATTCAATGCAAGAGATTGTCATTGAAGATGCTTCTGAGGATATTCCCGAAGAAGAAGCGGTTTGTAGGATTTGTTTGGTGGAGCTTACGGAAGGGGGTGATACTCTTAGGATGGATTGCAGTTGTAAAGGCGAGCTTGCACTTGCTCACCAAGATTGCGCAGTGAAGTGGTTTAGTATCAAAGGAAATAAGACATGTGATGTATGCAAGCAGGATGTCCGGAACCTTCCAGTAACACTCTTGAAAATTTCTAGTCCTCCAACTGTTGTTCGGCGTCCATTGAATGCATCACAGCAGAGAGAAACAGCTAATTACAGGATCTGGCAGGATGTACCGGTACTTGTCTTGGTCAGCACTCTTGCATACTTTTGTTTTCTTGAGGAACTACTGTGTACCAGGTTACGGATTTGGGTCCACGTGCTCTCGCCATTTCTCTGCCTTTCTCATGCATCTTAG 1104 0.423 MDKEGVELQTDAGSMIGDSLLLHNQVSRRPSLSSLQIPTRSLESAFSSSTKTDGPTLSSPGSTRGLPPRPHSTKVKSSMRSLLSDRSFRTKTCSQDCEKTVLIVPDTLSSNGPLDKPSTSRSLSLNKILFPSSTKAAHSLPVTPVANSGGDNVDGTRVEGDSDLNKVKVNKHMTRSFSVPVNVKATNLRPTDSRRLVRVISARPHTAPSDGISTRSDSMQEIVIEDASEDIPEEEAVCRICLVELTEGGDTLRMDCSCKGELALAHQDCAVKWFSIKGNKTCDVCKQDVRNLPVTLLKISSPPTVVRRPLNASQQRETANYRIWQDVPVLVLVSTLAYFCFLEELLCTRLRIWVHVLSPFLCLSHAS* 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g2495 367 SUPERFAMILY RING/U-box 234 289 - -
Psa5g2495 367 CDD RING_CH-C4HC3_MARCH 238 286 - -
Psa5g2495 367 PANTHER OS02G0165000 PROTEIN 24 351 - -
Psa5g2495 367 SMART ringv_2 237 286 IPR011016 GO:0008270
Psa5g2495 367 Pfam RING-variant domain 238 285 IPR011016 GO:0008270
Psa5g2495 367 MobiDBLite consensus disorder prediction 29 66 - -
Psa5g2495 367 PANTHER OS02G0165000 PROTEIN 24 351 - -
Psa5g2495 367 MobiDBLite consensus disorder prediction 29 83 - -
Psa5g2495 367 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 224 293 IPR013083 -
Psa5g2495 367 ProSiteProfiles Zinc finger RING-CH-type profile. 230 292 IPR011016 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g2495 Psa-Chr5 190546582 190549665 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g2495 232 342 C3H Transcription Factor Family AT2G37950 35.294 3.44e-14 68.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g2495 - - pvu:PHAVU_006G002500g 472.626