Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g2485 ATGATGAGAACAGTCCAATTGTTCTTTGCTTTAACAACTCCAGTTGGAATTGGAATTGGCATAGGGATCAGTAGTGTTTATGATGAGAACAGTCCAACAGCCCTTATAGTTGAAGGAATCTTCAATGCAGCTTCAGCTGGAATCTTGCTTTATATGGCACTTGTAGATCTTCTTGCTGCTGATTTTATGAATCCAAGGATGCAAAAGAGTGGTACTCTTCGATTAGGCGACATCAGTCACCCTGCACCTACAAGTCGATCTGCTGAACTCAATAATTCTCTTAATATGTCACAATCTTCTAGATTTGACTATACCAAACCGTATATGGCGGGAGGCACAAAACCAAAGCCACGCGACGAGCAGTACATATTACGAGTTGCATTGCAGGATCTGTCTCAGCCAAAGTCAGAAGTTAGTCCCCCAGATGGGCTGTTGGCAGTTCCTCTTTTACGTCACCAGAGAATTGCTTTATCGCGGATGGTTCAGAAGGAAACATCAAGAAAGGGCTCCATTGCTCAAGACATGCAAAAGTGCACAAAAAGTGCATTAGAAACCTTGGATTTGGATGATGACCCACTTTCTGAGAATGGTGTAATGAAAAAGGAATCTAACATGTGTCAAGATACATGTAACAGAAATGCAATCACAGGTGTGAATTTGTCGGTGCACACAAAGGGCACGCCATCTGCAGGAACCCTTGTTGTTTGTCCAGCTAGTGTCCTGCGACAGTGGGCTGACGAACTGCATAATAAAGTAACCTGCAAAGCAAATCTCTCTGTGCTTGTGTACCATGGAAGCAGTCGAACCAAAGATCCATATGAGCTTGCCAAGTATGATTTTGTTTTGACTACTTATTCAATTGTTAGCATGGAGGTCCCTAAGCAGCCACTGGTTGACAAAGATGACGTAGAAAAAGAAACTTATGAAGATCATGCTATGCCGAGTAAGAAAAGGAAATGCCCTCTAATTGTCCTGGATGAGGCAAAGTATAAAGAATCACAGAACTCAAGTTGCAAGGGCCTGTTGGGTCTTCGAGCTAAGCGCAGATGGTGCTTGTCCGGAACTCCAATCCAGAATTCAATTGATGATCTCTACAGAAATCCATCAAAAGGGTATAGAAAGCTGCAAACTATCTTAAAGACGATCATGTTACGTCGGACAAAAGGCTCACTTCTTGATGGGGAGCCTATTATATCTTTGCCAACTAAATATGTGGAGTTGAAAAAAGTGGAATTTTCACAGGAGGAACGAGATTTCTATTCCAAGCTAGAGGCCGATTCACGTGCACAGTTTCAAGAATACGCCGATGTTGGTACTGTGAAGCAAAACTATGTCAACATTTTATTGATGCTTTTGCGCCTTAGACAAGCCTGCGACCACCCTCAGCTTGTTAAGCGTTACAATTCTACTACTCTCCGGAAATCTTCAGTTGAGACGGAAAAACAACTATTTCTTTTGAAATGTTTAGAGGCTTCCTTGGCTCTCTGTGGTATCTGTAATGATGCTCCTGAAGATGCTGTTGTTTCAGTATGTGGTCATGTTTTCTATAACCAGTGCATTTGTGAACATCTAACTGGTGAGGACAATCAGTGCCCTGCCACAAACTGCAAAACTCGACTTAGCACGTCTTCAGTGTTTCCCAAAGCCACACTGAACAGTTCTTTATCTGATCAGTCTTGTGATCTTTTGCTTGGTTACTCTGGTTCTGAGGTCGAGGATTCTGAATCTTGTTCTCAGACTAAGCCATATAATTCTTCCAAAACAAAAGCCGCACTTGAGGTGTTGCAGTCATTGTTTAAGCCCCAATGCCGTACTTCCCAAGAAAATTGTGTGTTGAGCACTTCTAAGGAAAGTACTGATTGCAGCTCCACTTCTGCTGACAGTGGAAAATCTTCTAGTGATGTTCCCAAAAAGAAAACTATGTTAATTGAGAAAGGCACTAACAATTTAGCATTCGGGCATCATTCACCTCATTATCCTCAGAATCCAAACCAATCAAACCATGAACTGAAGCATCAAAATCAAATTTGTAACCAGAATCATTTAAGGAAACCTTCTGAAACTTTTACTGAACCCTTGGGGGCAGGATTTGAGAAGGTTGTGGAGAGAGAGGACACTGGTTTAGATGTTGATAACAAGGTTGCTTCAGACATCGGAGAAAACAACATTACATCTAACATTTTGTCTTTGGAACTAGATGCATGGGAAGATTCACTAGTTAAGTTGTTGGATGAAATTGATGAACCATATACATCCTTCAAAGCACCTGCTTTGCGGAAAATCCAAGACAAGAATCAGTCCAGGTTTTCCTTTGCCAGACAAGATGATTCCTTGAATAAGACATCTGTTTTGCAGCAATCTGGGATTTGCGGAAAATCCAAGACAAGAATCAGTCCAGAAGAAGGTCTTGGACTTAGCATTGGAGATGATTTGAGGGACATTGAGATTCTTGGTCAGACTCCTGGAGTAGAAAACTCGCCGGTTTTTGAAGCAATCCTACAGATTGGCAAATACTTTGCAGGTCTGGAGCAGGAAAATGGTGCTGAAACCATAGTTCAGCAAATAGACCTTTCAGTTGATGGTGCTACTTGTGAGGAAGAGAGAAATGTAGACTTTGGTGGTCAAGATACAGGTGAAGAAAGCCTGCACACTAACGAGCCTACATCACGACTACATGAATACGGAAGGGCTGCTAATGAACTTACTAACAACCAAAATGTGCCAGTTATACCATTGGTTTGCAATGGAACATCTAATGTTTCCGGACAACCTGCTAATCTTGAGTTACCGGACTCTGGTTTGGAGACTCCTAATCCAAATGACCCAACAATAAATGCTAATGTTGATGTTGAGATGGGTGGTGTTGATGCTGAAAGTAATCAGTCTGGGCAACCAACAGTTTTCGAAGACAGGAGGTCCGCTCTTACGGATTCCTTGAAGGTGAAAGAGATTGAAGTTGAGCCACTACTTAATGCAAATGCATTAAAAGCTTTAATCCGGCTTCTACGTTTGGCACAACCCCTGGGAAAAGGCCTTCTGCAGAGACTCTTTTTAAACTTATGTGCACATAGTGTAACAAGGGCCACTTGTGCACATAGTGTAACAAGGGCCACTCTTATTTATCTTTTGCTTGATATGATTAAGCCGGAAACTGAAGTTTCGGACTGTCCCAATAAAACAAGGTCACAAATTAAGAATTGTATGGCCAGACAGGTTCTTCGAAAGCAAGAAGAGAAGAGGCCTCGACTTCTGCACAGACCAATACCTTTTGGTAAGCCGTGGAGACTTCCTGGAGCTGACATAACAGATTACTTCAATTTTGGTTTTGATGAAAACACCTGGAAGCAGTACCGTTTGTCTATGATATCCGCACAGGAGCAATTTGATCAACCTGTATCAGAGAGCTTACAATCTCGTTCCTCAAAATGTGAGGTGCCAAAGGGCAGGGCAATACAGGTTGAGGACAGTGTGTTTGAGTGCCAACCGCCCATTCATGTGAGGCGTCAACATGATATAGATTTTGATGTTGTTATACAGATCAAGGTGCAGGGATCCCCTGGCAACGATTCTGGTTCGGTCAAAAGCAACATACACGAAGAGTCGTCTGGTCAAGAAAGAAATGAGATGATTCCTGATGTGGTTAAAGTTCAGCATCCAGATGAAGAGGACCGAGATTCCGAAGATGGTAAATTGCTGGAGGAAGAAATAAAAACGGAGAGAGTTGGCATTGACACATGTAGTGCAGATCCATGCTGGAGCGAACCAGAATTATCACTTGGTGATCAAGAACTTAGTCTGACTTCCTATTCTGACAGTGATTCTGAGGGAACCGAAGATAGTCTACATGTTTATAATGAACGAAATCACAGCCCTCTAAGAAGTCATTTGGTGAATTCTGATACCAGCTTAAAGGAGTCTTTGTCACTTTATGATAAAACCTCAAAGAACATCAGTGTCAACAGAAAACCAGTAGATATATCTTATTATTCAAGAAATAGAGGGCAGTGA 4008 0.4199 MMRTVQLFFALTTPVGIGIGIGISSVYDENSPTALIVEGIFNAASAGILLYMALVDLLAADFMNPRMQKSGTLRLGDISHPAPTSRSAELNNSLNMSQSSRFDYTKPYMAGGTKPKPRDEQYILRVALQDLSQPKSEVSPPDGLLAVPLLRHQRIALSRMVQKETSRKGSIAQDMQKCTKSALETLDLDDDPLSENGVMKKESNMCQDTCNRNAITGVNLSVHTKGTPSAGTLVVCPASVLRQWADELHNKVTCKANLSVLVYHGSSRTKDPYELAKYDFVLTTYSIVSMEVPKQPLVDKDDVEKETYEDHAMPSKKRKCPLIVLDEAKYKESQNSSCKGLLGLRAKRRWCLSGTPIQNSIDDLYRNPSKGYRKLQTILKTIMLRRTKGSLLDGEPIISLPTKYVELKKVEFSQEERDFYSKLEADSRAQFQEYADVGTVKQNYVNILLMLLRLRQACDHPQLVKRYNSTTLRKSSVETEKQLFLLKCLEASLALCGICNDAPEDAVVSVCGHVFYNQCICEHLTGEDNQCPATNCKTRLSTSSVFPKATLNSSLSDQSCDLLLGYSGSEVEDSESCSQTKPYNSSKTKAALEVLQSLFKPQCRTSQENCVLSTSKESTDCSSTSADSGKSSSDVPKKKTMLIEKGTNNLAFGHHSPHYPQNPNQSNHELKHQNQICNQNHLRKPSETFTEPLGAGFEKVVEREDTGLDVDNKVASDIGENNITSNILSLELDAWEDSLVKLLDEIDEPYTSFKAPALRKIQDKNQSRFSFARQDDSLNKTSVLQQSGICGKSKTRISPEEGLGLSIGDDLRDIEILGQTPGVENSPVFEAILQIGKYFAGLEQENGAETIVQQIDLSVDGATCEEERNVDFGGQDTGEESLHTNEPTSRLHEYGRAANELTNNQNVPVIPLVCNGTSNVSGQPANLELPDSGLETPNPNDPTINANVDVEMGGVDAESNQSGQPTVFEDRRSALTDSLKVKEIEVEPLLNANALKALIRLLRLAQPLGKGLLQRLFLNLCAHSVTRATCAHSVTRATLIYLLLDMIKPETEVSDCPNKTRSQIKNCMARQVLRKQEEKRPRLLHRPIPFGKPWRLPGADITDYFNFGFDENTWKQYRLSMISAQEQFDQPVSESLQSRSSKCEVPKGRAIQVEDSVFECQPPIHVRRQHDIDFDVVIQIKVQGSPGNDSGSVKSNIHEESSGQERNEMIPDVVKVQHPDEEDRDSEDGKLLEEEIKTERVGIDTCSADPCWSEPELSLGDQELSLTSYSDSDSEGTEDSLHVYNERNHSPLRSHLVNSDTSLKESLSLYDKTSKNISVNRKPVDISYYSRNRGQ* 1336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g2485 1335 CDD DEXDc_SHPRH-like 149 386 - -
Psa5g2485 1335 Pfam ZIP Zinc transporter 4 70 IPR003689 GO:0016020|GO:0030001|GO:0046873|GO:0055085
Psa5g2485 1335 Pfam Fip1 motif 1091 1118 IPR007854 -
Psa5g2485 1335 Gene3D - 214 398 IPR038718 -
Psa5g2485 1335 SUPERFAMILY RING/U-box 493 551 - -
Psa5g2485 1335 SMART ultradead3 145 385 IPR014001 -
Psa5g2485 1335 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 138 386 IPR027417 -
Psa5g2485 1335 MobiDBLite consensus disorder prediction 1199 1231 - -
Psa5g2485 1335 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 489 547 IPR013083 -
Psa5g2485 1335 Pfam SNF2-related domain 369 464 IPR000330 GO:0005524|GO:0140658
Psa5g2485 1335 Pfam SNF2-related domain 227 365 IPR000330 GO:0005524|GO:0140658
Psa5g2485 1335 MobiDBLite consensus disorder prediction 1185 1231 - -
Psa5g2485 1335 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 101 605 - -
Psa5g2485 1335 PANTHER HELICASE-LIKE TRANSCRIPTION FACTOR CHR28 101 605 - -
Psa5g2485 1335 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 394 599 IPR027417 -
Psa5g2485 1335 ProSiteProfiles Zinc finger RING-type profile. 496 535 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g2485 Psa-Chr5 189932881 189939020 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g2485 110 638 RAD5 or RAD16-like Gene Family AT1G61140 50.000 8.07e-161 511
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Psa5g2485 SNF2_N 1.9e-25 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g2485 - - gmx:100792901 776.163