Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g2473 ATGAATGCTCTTCTTCGTTGCATGATTTCTCTTGTATTATTCTCTTCTCTTCTGATAAATCCTTGTTATTGCTTCAAAAGGAATCCATTTAATGTTTCTCATTTTGAAAAGGATAAGGATGATGATGATGATGATGATAAATGGCAAAAGGGAACAGCTACACATTATGGACCTCCAAATGGTGCTGGATCAACAGGAGGTGCATGTGGATATGGTGATACCGTAGAAAAATATCCGATTAATAAAATGATATCTGCTGCCGGTGGATCTATTTTCCGTGGTGGAAAAGGTTGTGGTTCTTGTTATAAGGTGAAATGCACAGAAAATAGTGAATGTTCAGGAAAATATGTGAGAGTGACTATAAGTGATGAATGTGGAGGATGTGATAAGGATCATTTGGATCTAAGTTGCACTGCCTTTGCTTCCCTTGCAAAAAAAGGCGAAGAAAATGCTAAAGAACTTCTCGATGCTGGACGCATTAAGATTCAGTACAAAAGGGTTGCATGCAATTTTGGGAGGTCAATAGCCTTTTTAATTGATAGTGGAGCCAACCCATATCATTTTATTGTTCAAATACAATATCAAAATGGATATGGTGACATTGAAAAAGTTGAATTGAAGCATGGGCATAAATCAAAAGTATGGGTTCCAATGCAACATTCTTGGGGTGCAAGATGGTTTTTGAGCAATAATGGTGTACCGTTGAAACCTCCATTTAGTATTAAGCTCACACAAAGTGGAAATGGAAAATCCAAGACCTTTAAAGCTCGTAAAGTCATTCCAAAAAGTTGGAAACCTGGCCAACTTTATTGGTCACGTTCTAATTTATAG 831 0.3694 MNALLRCMISLVLFSSLLINPCYCFKRNPFNVSHFEKDKDDDDDDDKWQKGTATHYGPPNGAGSTGGACGYGDTVEKYPINKMISAAGGSIFRGGKGCGSCYKVKCTENSECSGKYVRVTISDECGGCDKDHLDLSCTAFASLAKKGEENAKELLDAGRIKIQYKRVACNFGRSIAFLIDSGANPYHFIVQIQYQNGYGDIEKVELKHGHKSKVWVPMQHSWGARWFLSNNGVPLKPPFSIKLTQSGNGKSKTFKARKVIPKSWKPGQLYWSRSNL* 277
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g2473 276 Pfam Lytic transglycolase 87 164 IPR009009 -
Psa5g2473 276 PRINTS Expansin/Lol pI family signature 47 62 IPR007118 GO:0005576
Psa5g2473 276 PRINTS Expansin/Lol pI family signature 65 83 IPR007118 GO:0005576
Psa5g2473 276 PRINTS Expansin/Lol pI family signature 88 106 IPR007118 GO:0005576
Psa5g2473 276 PRINTS Expansin/Lol pI family signature 157 173 IPR007118 GO:0005576
Psa5g2473 276 PRINTS Expansin/Lol pI family signature 215 229 IPR007118 GO:0005576
Psa5g2473 276 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 66 174 IPR007112 -
Psa5g2473 276 Gene3D - 171 276 IPR036749 -
Psa5g2473 276 PRINTS Major pollen allergen Lol pI signature 86 97 IPR005795 GO:0005576|GO:0019953
Psa5g2473 276 PRINTS Major pollen allergen Lol pI signature 106 116 IPR005795 GO:0005576|GO:0019953
Psa5g2473 276 PRINTS Major pollen allergen Lol pI signature 177 192 IPR005795 GO:0005576|GO:0019953
Psa5g2473 276 PRINTS Major pollen allergen Lol pI signature 193 208 IPR005795 GO:0005576|GO:0019953
Psa5g2473 276 PRINTS Major pollen allergen Lol pI signature 248 265 IPR005795 GO:0005576|GO:0019953
Psa5g2473 276 PANTHER EXPANSIN-LIKE PROTEIN B1 4 275 - -
Psa5g2473 276 SUPERFAMILY PHL pollen allergen 173 272 IPR036749 -
Psa5g2473 276 PANTHER EXPANSIN-B3 4 275 - -
Psa5g2473 276 SUPERFAMILY Barwin-like endoglucanases 46 171 IPR036908 -
Psa5g2473 276 Pfam Expansin C-terminal domain 175 261 IPR007117 -
Psa5g2473 276 Gene3D - 32 170 IPR036908 -
Psa5g2473 276 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 186 272 IPR007117 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g2473 Psa-Chr5 188863177 188864551 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g2473 20 276 Expansin Gene Family AT1G65680 43.462 2.06e-69 214
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g2473 - - var:108346495 272.322