Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Psa5g2473 | ATGAATGCTCTTCTTCGTTGCATGATTTCTCTTGTATTATTCTCTTCTCTTCTGATAAATCCTTGTTATTGCTTCAAAAGGAATCCATTTAATGTTTCTCATTTTGAAAAGGATAAGGATGATGATGATGATGATGATAAATGGCAAAAGGGAACAGCTACACATTATGGACCTCCAAATGGTGCTGGATCAACAGGAGGTGCATGTGGATATGGTGATACCGTAGAAAAATATCCGATTAATAAAATGATATCTGCTGCCGGTGGATCTATTTTCCGTGGTGGAAAAGGTTGTGGTTCTTGTTATAAGGTGAAATGCACAGAAAATAGTGAATGTTCAGGAAAATATGTGAGAGTGACTATAAGTGATGAATGTGGAGGATGTGATAAGGATCATTTGGATCTAAGTTGCACTGCCTTTGCTTCCCTTGCAAAAAAAGGCGAAGAAAATGCTAAAGAACTTCTCGATGCTGGACGCATTAAGATTCAGTACAAAAGGGTTGCATGCAATTTTGGGAGGTCAATAGCCTTTTTAATTGATAGTGGAGCCAACCCATATCATTTTATTGTTCAAATACAATATCAAAATGGATATGGTGACATTGAAAAAGTTGAATTGAAGCATGGGCATAAATCAAAAGTATGGGTTCCAATGCAACATTCTTGGGGTGCAAGATGGTTTTTGAGCAATAATGGTGTACCGTTGAAACCTCCATTTAGTATTAAGCTCACACAAAGTGGAAATGGAAAATCCAAGACCTTTAAAGCTCGTAAAGTCATTCCAAAAAGTTGGAAACCTGGCCAACTTTATTGGTCACGTTCTAATTTATAG | 831 | 0.3694 | MNALLRCMISLVLFSSLLINPCYCFKRNPFNVSHFEKDKDDDDDDDKWQKGTATHYGPPNGAGSTGGACGYGDTVEKYPINKMISAAGGSIFRGGKGCGSCYKVKCTENSECSGKYVRVTISDECGGCDKDHLDLSCTAFASLAKKGEENAKELLDAGRIKIQYKRVACNFGRSIAFLIDSGANPYHFIVQIQYQNGYGDIEKVELKHGHKSKVWVPMQHSWGARWFLSNNGVPLKPPFSIKLTQSGNGKSKTFKARKVIPKSWKPGQLYWSRSNL* | 277 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Psa5g2473 | 276 | Pfam | Lytic transglycolase | 87 | 164 | IPR009009 | - | |
Psa5g2473 | 276 | PRINTS | Expansin/Lol pI family signature | 47 | 62 | IPR007118 | GO:0005576 | |
Psa5g2473 | 276 | PRINTS | Expansin/Lol pI family signature | 65 | 83 | IPR007118 | GO:0005576 | |
Psa5g2473 | 276 | PRINTS | Expansin/Lol pI family signature | 88 | 106 | IPR007118 | GO:0005576 | |
Psa5g2473 | 276 | PRINTS | Expansin/Lol pI family signature | 157 | 173 | IPR007118 | GO:0005576 | |
Psa5g2473 | 276 | PRINTS | Expansin/Lol pI family signature | 215 | 229 | IPR007118 | GO:0005576 | |
Psa5g2473 | 276 | ProSiteProfiles | Expansin, family-45 endoglucanase-like domain profile. | 66 | 174 | IPR007112 | - | |
Psa5g2473 | 276 | Gene3D | - | 171 | 276 | IPR036749 | - | |
Psa5g2473 | 276 | PRINTS | Major pollen allergen Lol pI signature | 86 | 97 | IPR005795 | GO:0005576|GO:0019953 | |
Psa5g2473 | 276 | PRINTS | Major pollen allergen Lol pI signature | 106 | 116 | IPR005795 | GO:0005576|GO:0019953 | |
Psa5g2473 | 276 | PRINTS | Major pollen allergen Lol pI signature | 177 | 192 | IPR005795 | GO:0005576|GO:0019953 | |
Psa5g2473 | 276 | PRINTS | Major pollen allergen Lol pI signature | 193 | 208 | IPR005795 | GO:0005576|GO:0019953 | |
Psa5g2473 | 276 | PRINTS | Major pollen allergen Lol pI signature | 248 | 265 | IPR005795 | GO:0005576|GO:0019953 | |
Psa5g2473 | 276 | PANTHER | EXPANSIN-LIKE PROTEIN B1 | 4 | 275 | - | - | |
Psa5g2473 | 276 | SUPERFAMILY | PHL pollen allergen | 173 | 272 | IPR036749 | - | |
Psa5g2473 | 276 | PANTHER | EXPANSIN-B3 | 4 | 275 | - | - | |
Psa5g2473 | 276 | SUPERFAMILY | Barwin-like endoglucanases | 46 | 171 | IPR036908 | - | |
Psa5g2473 | 276 | Pfam | Expansin C-terminal domain | 175 | 261 | IPR007117 | - | |
Psa5g2473 | 276 | Gene3D | - | 32 | 170 | IPR036908 | - | |
Psa5g2473 | 276 | ProSiteProfiles | Expansin, Cellulose-binding-like domain profile. | 186 | 272 | IPR007117 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Psa5g2473 | Psa-Chr5 | 188863177 | 188864551 | Dispersed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Psa5g2473 | 20 | 276 | Expansin Gene Family | AT1G65680 | 43.462 | 2.06e-69 | 214 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Psa5g2473 | - | - | var:108346495 | 272.322 |