Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Psa5g2461 | ATGGGCCTATCAAGTCTTCCAGCACCATCTGAAGGAGTGTTATGCATAATTCTAGTAAACACTGCCATGTCCATATCCATATTCAAAGGGATTATTAAAACTATCCTACATATAATTGGCATCATTGCTTCACCACCACCCTCCTCAACTTCAGATGAGTTCCATCTCAGTCCTTCAGATGATTTCATTCAAGAGTTCAGAAGCATGACACCAACACTTAGGTTTGAGAGTGTGTGTAGTAGCTGCAAAGAGCCTGAACATGATTGTTCAGTTTGTCTCACTCAATTTGAACCAGAATCAGAGATAAACTACTGTTTATCGTGTGGACATCTTTTCCATAAAGTTTGTTTGGAGAAGTGGTTGGACTATTGGAACATTACATGTCCACTTTGTAGGACTCCTTTAATTCCTGAAGATGATGCATCTTGCTTTTCATGA | 438 | 0.3927 | MGLSSLPAPSEGVLCIILVNTAMSISIFKGIIKTILHIIGIIASPPPSSTSDEFHLSPSDDFIQEFRSMTPTLRFESVCSSCKEPEHDCSVCLTQFEPESEINYCLSCGHLFHKVCLEKWLDYWNITCPLCRTPLIPEDDASCFS* | 146 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Psa5g2461 | 145 | SMART | ring_2 | 89 | 131 | IPR001841 | - | |
Psa5g2461 | 145 | SUPERFAMILY | RING/U-box | 81 | 138 | - | - | |
Psa5g2461 | 145 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 52 | 137 | IPR013083 | - | |
Psa5g2461 | 145 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE XERICO-RELATED | 1 | 144 | - | - | |
Psa5g2461 | 145 | ProSiteProfiles | Zinc finger RING-type profile. | 89 | 132 | IPR001841 | - | |
Psa5g2461 | 145 | PANTHER | - | 1 | 144 | IPR044249 | - | |
Psa5g2461 | 145 | Pfam | Ring finger domain | 88 | 132 | IPR001841 | - | |
Psa5g2461 | 145 | SMART | ringv_2 | 88 | 132 | IPR011016 | GO:0008270 |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Psa5g2461 | 1 | 139 | C3H Transcription Factor Family | AT2G04240 | 57.419 | 1.13e-54 | 167 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Psa5g2461 | K16285 | - | gmx:100786803 | 220.705 |