Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g2461 ATGGGCCTATCAAGTCTTCCAGCACCATCTGAAGGAGTGTTATGCATAATTCTAGTAAACACTGCCATGTCCATATCCATATTCAAAGGGATTATTAAAACTATCCTACATATAATTGGCATCATTGCTTCACCACCACCCTCCTCAACTTCAGATGAGTTCCATCTCAGTCCTTCAGATGATTTCATTCAAGAGTTCAGAAGCATGACACCAACACTTAGGTTTGAGAGTGTGTGTAGTAGCTGCAAAGAGCCTGAACATGATTGTTCAGTTTGTCTCACTCAATTTGAACCAGAATCAGAGATAAACTACTGTTTATCGTGTGGACATCTTTTCCATAAAGTTTGTTTGGAGAAGTGGTTGGACTATTGGAACATTACATGTCCACTTTGTAGGACTCCTTTAATTCCTGAAGATGATGCATCTTGCTTTTCATGA 438 0.3927 MGLSSLPAPSEGVLCIILVNTAMSISIFKGIIKTILHIIGIIASPPPSSTSDEFHLSPSDDFIQEFRSMTPTLRFESVCSSCKEPEHDCSVCLTQFEPESEINYCLSCGHLFHKVCLEKWLDYWNITCPLCRTPLIPEDDASCFS* 146
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g2461 145 SMART ring_2 89 131 IPR001841 -
Psa5g2461 145 SUPERFAMILY RING/U-box 81 138 - -
Psa5g2461 145 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 52 137 IPR013083 -
Psa5g2461 145 PANTHER E3 UBIQUITIN-PROTEIN LIGASE XERICO-RELATED 1 144 - -
Psa5g2461 145 ProSiteProfiles Zinc finger RING-type profile. 89 132 IPR001841 -
Psa5g2461 145 PANTHER - 1 144 IPR044249 -
Psa5g2461 145 Pfam Ring finger domain 88 132 IPR001841 -
Psa5g2461 145 SMART ringv_2 88 132 IPR011016 GO:0008270
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g2461 1 139 C3H Transcription Factor Family AT2G04240 57.419 1.13e-54 167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g2461 K16285 - gmx:100786803 220.705