Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g2459 ATGGGATACATATGTGATTTTTGTGGAGACCAGAGGTCGATGGTGTACTGCCGATCCGATGCAGCGTGTTTATGTTTGTCGTGTGATCGGAATGTTCATTCAGCGAATACGCTTGCTCGAAGGCATTCAAGGACGCTTTTATGTGAGAGATGCAGTTCACAGCCTGCTTTGGTTAGGTGTTCGGAAGAGAAAATTTCACTTTGTCAGAATTGTGATTGGTTAGGCCATGGTAACTCGGCGTCTTCCAATCATAAGAGGCAAACAATCAATTGTTACTCGGGCTGTCCTTCGTCGGCGGAACTCTCTTCGATATGGTCTTTTGTGTTGGATATTCCTTCTTTAAGTGAAACTACGTGCGAGCAAGAACTTGGTTTCATGAGTATTAATGAGAACAGAAGTGCTTGGGTCGATCCGAAAAACCAGAATACGTCTGATTCGGATAAAGTTACTGATCAGCCTGACTTGGATAAGTCTTTCGTCGGTACATCTTCAATTCCCGAATCAAGCAAAGAACCGCACATGATCGACCGCCCTGATGGACCTACTAATGAACGTGCGCCAAAGTTATACTGTCCTGCTACGAAATGCCCTGAAATTAGTGAAGATGATGATGATTTGTACGGCGATTTCGATATGGATGAAATGGATATAAATATGGAGAACTATGATGAACTTTTTGGTATGGCCCTCACTCATTCTGAAGAGCTTTTTGAAAATGGTGGATTTAACAGCTTATTCAGAGCAAAAGCCATGTCTGCTGGAGATTCCAATTGTCAAGATGCTATAGTTGCTGAGGGTTCATCGATTGGACATGTCAATGCAGCGCAACCAGCATGCAGCAATGCAGCGTCTGCAGATTCCATATTGAGTACTAAAACTGAACCGAATTTTTGTATTACGACAAAGCAATCGCAATCAAGTCTTTCTTTTTCTGGTATCAATGAAGACGGTTGTGCTGGAGATTATCAAGATTGTGGAGCTTCTTCAATGTTTCTCATGGGAGAACCTCCTTGGTTAAACACTTGTCCGGAGAATGAGCTGCAGCTACAATCTGCTAACCGCTGCAGTGCTGTTATGCGATACAAGGAAAAGAAGAAAACACGCAAGTTTGACAAAAGAGTGAGGTATGCCTCTCGCAAGGAAAGGGCTGATGTACGAAGACGCGTGAAAGGCCGGTTTGTCAAAGCTGGCGAGGCCTATGATTATGATCCTTTGAGCCAAACCAGAAGCTACTGA 1236 0.4361 MGYICDFCGDQRSMVYCRSDAACLCLSCDRNVHSANTLARRHSRTLLCERCSSQPALVRCSEEKISLCQNCDWLGHGNSASSNHKRQTINCYSGCPSSAELSSIWSFVLDIPSLSETTCEQELGFMSINENRSAWVDPKNQNTSDSDKVTDQPDLDKSFVGTSSIPESSKEPHMIDRPDGPTNERAPKLYCPATKCPEISEDDDDLYGDFDMDEMDINMENYDELFGMALTHSEELFENGGFNSLFRAKAMSAGDSNCQDAIVAEGSSIGHVNAAQPACSNAASADSILSTKTEPNFCITTKQSQSSLSFSGINEDGCAGDYQDCGASSMFLMGEPPWLNTCPENELQLQSANRCSAVMRYKEKKKTRKFDKRVRYASRKERADVRRRVKGRFVKAGEAYDYDPLSQTRSY* 412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g2459 411 MobiDBLite consensus disorder prediction 136 185 - -
Psa5g2459 411 CDD Bbox1_BBX-like 4 47 - -
Psa5g2459 411 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 1 411 - -
Psa5g2459 411 CDD Bbox1_BBX-like 47 89 - -
Psa5g2459 411 SMART bboxneu5 48 89 IPR000315 GO:0008270
Psa5g2459 411 SMART bboxneu5 4 47 IPR000315 GO:0008270
Psa5g2459 411 ProSiteProfiles CCT domain profile. 354 396 IPR010402 GO:0005515
Psa5g2459 411 Pfam CCT motif 354 396 IPR010402 GO:0005515
Psa5g2459 411 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 9-LIKE 1 411 - -
Psa5g2459 411 ProSiteProfiles Zinc finger B-box type profile. 43 89 IPR000315 GO:0008270
Psa5g2459 411 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g2459 Psa-Chr5 187478164 187481433 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g2459 1 411 C2C2-CO-like Transcription Factor Family AT3G07650 52.955 1.24e-144 414
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Psa5g2459 CCT 7.4e-16 CL0281