Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g2458 ATGGGAGAAACACGAAGTGAGGTAGCATGGGAGAAGAAGGAAGAGGATGAAGAAAAAGAAGAAGCAGAAGCTCAAGTTGAAATTTGGAAGTACGTATTTGGTTTTGTAGAACAGTCTGTGGTGAGATGTGCAATTCAACTTGGCATAGCTGAAGCCATCGAAAAGCACAAAAAACCCATATCACTATTAGAGTTATCATCAACTCTAAAATGCGACCCTTCCTATCTTAACCGCATCATGAGATTCCTAGTACATAGGAAAATATTCAAAAACATATCTACCAACCATGACAACTATCCCAGTTATGTTCAAACCCCACTTTCTCGCCGTTTTATTCGAAACGGCGAGCAAAGCATAGCTGCTCTTCTTTTACTAGAAAGCAGTCCTGTTATGGTAGCACCTTGGCTTAGTCTCAGTGACCGTGTTTTGTGTGATGGGGTAGAACATGTCGCAGGTGACATGTTTACAACTGTTCCCAAAGCCGATGCTGTCATTTTTAAGTGGGTTTTGCATGATTGGGGAGATGAAGAGTGCATCCAAATCTTAAAGAATTGTAGGGAGGCTATACCAAAAGAAAATGGAAAAGTGATTATTGTTGACGTGATTATTGAAGAAGAGGGAGGAAAACCCAACAAGTACGATGATGTAGGGTTAATGTTAGACATGGTGATGATGGCACATACGGACATTGGAAAAGAGAGAACACTAAAAGAGTGGGAGCATGTGATCAAAATGGCTGGATTCAACACATTCACTGTGAAATCTATCGATGCCGTGCAGTCTGTAATTGTGGCCTCAGGCTAA 804 0.4117 MGETRSEVAWEKKEEDEEKEEAEAQVEIWKYVFGFVEQSVVRCAIQLGIAEAIEKHKKPISLLELSSTLKCDPSYLNRIMRFLVHRKIFKNISTNHDNYPSYVQTPLSRRFIRNGEQSIAALLLLESSPVMVAPWLSLSDRVLCDGVEHVAGDMFTTVPKADAVIFKWVLHDWGDEECIQILKNCREAIPKENGKVIIVDVIIEEEGGKPNKYDDVGLMLDMVMMAHTDIGKERTLKEWEHVIKMAGFNTFTVKSIDAVQSVIVASG* 268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g2458 267 Gene3D Vaccinia Virus protein VP39 144 253 IPR029063 -
Psa5g2458 267 CDD AdoMet_MTases 107 203 - -
Psa5g2458 267 Coils Coil 5 25 - -
Psa5g2458 267 Pfam O-methyltransferase domain 145 249 IPR001077 GO:0008171
Psa5g2458 267 SUPERFAMILY "Winged helix" DNA-binding domain 19 115 IPR036390 -
Psa5g2458 267 Gene3D - 10 110 IPR036388 -
Psa5g2458 267 PANTHER O-METHYLTRANSFERASE 144 262 IPR016461 GO:0008168
Psa5g2458 267 PANTHER O-METHYLTRANSFERASE 15 143 IPR016461 GO:0008168
Psa5g2458 267 Pfam Dimerisation domain 40 84 IPR012967 GO:0046983
Psa5g2458 267 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 145 267 IPR016461 GO:0008168
Psa5g2458 267 PANTHER 3'-HYDROXY-N-METHYL-(S)-COCLAURINE 4'-O-METHYLTRANSFERASE 2-LIKE 144 262 - -
Psa5g2458 267 PANTHER 3'-HYDROXY-N-METHYL-(S)-COCLAURINE 4'-O-METHYLTRANSFERASE 2-LIKE 15 143 - -
Psa5g2458 267 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 126 264 IPR029063 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g2458 Psa-Chr5 187362104 187363699 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g2458 146 248 Monolignol Biosynthesis Gene Families AT1G77520 47.573 2.06e-28 109
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g2458 K22588 - mtr:MTR_4g025570 279.256