Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g2452 ATGGCGTCAAGAAAGACCGATAACCCCCAATACGGTGACGGTGCCAGTCCCGGAAAAATCTTCATCGGAGGGTTAGCCAAAGATACAACCCTAGAAACGTTCGTGAAGTACTTCGAAAGGTATGGAGAGATAACAGATTCCGTTATCATGAAGGATCGACAAACGGGTCGACCCAGAGGGTTTGGGTTCATTACTTATGCGGATCCTTCTGTGGTTGATCAAGTTATTCAGGAGAACCACATCATCAATGATAAGCAGGTTGAAATCAAGAGGACCATTCCAAAGGGTGCATCACACACTAGTGACTTCAAAACTAAGAAGATTTTTGTAGGTGGGATTCCAGCAGCAGTATCTGAAGATGAGCTGAAGAACTTCTTCTCTAAGCATGGAAATGTTGTGGAGCACGAGATAATACGTGACCACGCCACTAAAAGATCTCGTGGATTTGGTTTTGTAGTGTTTGATAATGATAAGGTTGTGGATACTTTGTTAGCTGATGGGAACATGATTGATATGGACGGTACTCAGGTTGAGATCAAGAAGGCTGAACCAAAGAAATCCTCAAGTTCAGCTTCTTTTCCTCCATTTGGTAGTGACTCTAGGTCACGTTCTTACAATGATGGTTTTGGTGGATTTGGTGATTCGTATGGAGGTTTTCCTGGTGGAGGTTATGGCCCTGCATCTTATAGGTCACTTGGAGGTTACACTGCTAGGCTTAGCGATTATGGTGGATATGGAGGTGGAGATGACTTCAGTGGTGGTTTTGGAGGTTATGGGGGCAGTGGTGGTGCTGGTGGTTATGCAGGCTATAGAGGAGAATCATCATTTGGCTACTCTGGCCGCTATGGGTCGTACATGGGTGGCCTTGGTGGTGGATATGGTGGTAGTGGGTTAGGCCCATATGGGAGAGGTGGTGCGGGCTATGGAAGTTATGGTGGTTCAGGCACTGGTGGAGGTTATGAATCTGGCCCTGGTGCTGGTTTTGGTGGAACAGGAGGACTCTATTCTAGTAGGGGAGGATATGGGGGCGGTAGTCGTTACCATCCTTACACAAGATAG 1059 0.4665 MASRKTDNPQYGDGASPGKIFIGGLAKDTTLETFVKYFERYGEITDSVIMKDRQTGRPRGFGFITYADPSVVDQVIQENHIINDKQVEIKRTIPKGASHTSDFKTKKIFVGGIPAAVSEDELKNFFSKHGNVVEHEIIRDHATKRSRGFGFVVFDNDKVVDTLLADGNMIDMDGTQVEIKKAEPKKSSSSASFPPFGSDSRSRSYNDGFGGFGDSYGGFPGGGYGPASYRSLGGYTARLSDYGGYGGGDDFSGGFGGYGGSGGAGGYAGYRGESSFGYSGRYGSYMGGLGGGYGGSGLGPYGRGGAGYGSYGGSGTGGGYESGPGAGFGGTGGLYSSRGGYGGGSRYHPYTR* 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g2452 352 MobiDBLite consensus disorder prediction 179 199 - -
Psa5g2452 352 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN 1 352 - -
Psa5g2452 352 PANTHER OS08G0320100 PROTEIN 1 352 - -
Psa5g2452 352 SMART rrm1_1 107 180 IPR000504 GO:0003723
Psa5g2452 352 SMART rrm1_1 19 90 IPR000504 GO:0003723
Psa5g2452 352 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 18 94 IPR000504 GO:0003723
Psa5g2452 352 Gene3D - 98 225 IPR012677 -
Psa5g2452 352 SUPERFAMILY RNA-binding domain, RBD 15 96 IPR035979 GO:0003676
Psa5g2452 352 Gene3D - 18 97 IPR012677 -
Psa5g2452 352 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 20 82 IPR000504 GO:0003723
Psa5g2452 352 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 108 162 IPR000504 GO:0003723
Psa5g2452 352 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 106 184 IPR000504 GO:0003723
Psa5g2452 352 SUPERFAMILY RNA-binding domain, RBD 100 213 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g2452 Psa-Chr5 186954944 186958797 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g2452 4 177 Eukaryotic Initiation Factors Gene Family AT1G71770 26.562 2.25e-14 72.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g2452 K12741 - gmx:100801373 369.007
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa5g2452 5 186954944 186958797 Psa2g0095 2 2894088 2898534 PCT