Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g2449 ATGGTTGAAGCTTCAGGGATGATGTATACCAACACAAACACTACTCTTGTTCCAGCTTTTAACCCTTCAATTCAGAGAAATCATCTTCGTTTATGTCAGCTACCTCTCTTACGAAGACACCATGTCCAATTTTCACTCTCTGCAACTGCAAGTGAAACCTCAGCATTTATGGAAACTATTCCCTGGGGTTGTGAGAATGATTCACTGGAAAACTCTTCTTCTCTTCTGAAATGGTTGTCACAGTCAGGTCTTCCTTCTCAGAAGATGGCCATTGATAAAGTTGATGTGGGAGAGAGAGGACTTGTTGCATTGAAGAATATTAGGAAAGGGGAGAAGCTTCTCTTTGTTCCTCCTTCACTTGTCATCACTCCAGATTCTGAGTGGAGTTGCCCGGAAGCTGGCGAAGTATTGAAAAAGAATTCAGTGCCGGATTGGCCATTGCTTGCAACTTACCTTATAAGTGAAGCTAGCCTCAAGGAATCTTCAAAATGGTTCAGTTATATATCGGCCTTACCTCGTCAACCTTACTCACTTCTATACTGGTCACAGTCTGAACTAGATCGCTACTTGAAAGCTTCGCAGATTAGGGAAAGAGCAATCGAAAGGACTAATAATGTTGTTGGAACATACAATGATATGAGGCTCCGTATATTTTCCAAATACCCTGATTTCTTCCCTGAAGAGGTGTTCAACATCAAGTCCTTCAAATGGTCATTCGGCATTCTTTTCTCCCGCATGGTTCGGTTACCCTCGATGGATGGAAAGGTGGCCTTGGTTCCTTGGGCAGATATGCTGAATCATAATTGTGAGGTGGAGACGTTTTTGGATTATGATAAATCTTCGAAGGGAATTGTCTTTACGACAGATCGTCCCTATCTACCAGGTGAGCAGGTGTTTATTTCATATGGGAATAAATCAAATGGGGAGCTTCTGTTATCTTATGGATTTGTTCCAAAGGAGGGCACGAATCCAAGCGATTCAGTTGAGCTGCCATTGTCCCTCAAGAAATCTGATGAGTGCTATGAGGAGAAGCTAGAACTGTTGAGGAAGTATGGATTATCAAGATCTCAGTGTTTTCCGTTAAGGATCACTGGTTGGCCGTTGGAGTTAATGGCTTATGCTTATTTAGCCGTTAGCCCTTCAAGCATGAGAGGAAAATTTGAAGAGATGGCTGCAACTGCATCAAATGAAACTACCTCCAATAAGGACTTGAGATATCCAGAAATAGAGGAGCAGGCATTGCAGTTCATACTAGATAGTTGTGAATCTAGTATCTCAAAATACAATAAGTTCTTACAGGCAAGTGGATCACTGGATTTGGACGTGACTTCTCCGAAACAACTTAACCGGAGACTCTTTCTAAAACAGCTAGCCGTGGACTTGTGTACGAGCGAGCGGAGGATACTATTCCGTGCGCAATATATATTGAGAAGAAGATTGAGGGATATGAAGACTGGTGAATTAAAAGCCTTAACTATCTTCAATGGGTTCAGGAAATTTTTCAAATGA 1509 0.4188 MVEASGMMYTNTNTTLVPAFNPSIQRNHLRLCQLPLLRRHHVQFSLSATASETSAFMETIPWGCENDSLENSSSLLKWLSQSGLPSQKMAIDKVDVGERGLVALKNIRKGEKLLFVPPSLVITPDSEWSCPEAGEVLKKNSVPDWPLLATYLISEASLKESSKWFSYISALPRQPYSLLYWSQSELDRYLKASQIRERAIERTNNVVGTYNDMRLRIFSKYPDFFPEEVFNIKSFKWSFGILFSRMVRLPSMDGKVALVPWADMLNHNCEVETFLDYDKSSKGIVFTTDRPYLPGEQVFISYGNKSNGELLLSYGFVPKEGTNPSDSVELPLSLKKSDECYEEKLELLRKYGLSRSQCFPLRITGWPLELMAYAYLAVSPSSMRGKFEEMAATASNETTSNKDLRYPEIEEQALQFILDSCESSISKYNKFLQASGSLDLDVTSPKQLNRRLFLKQLAVDLCTSERRILFRAQYILRRRLRDMKTGELKALTIFNGFRKFFK* 503
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g2449 502 SUPERFAMILY SET domain 73 320 IPR046341 -
Psa5g2449 502 SMART set_7 87 309 IPR001214 GO:0005515
Psa5g2449 502 CDD SET_RBCMT 81 317 IPR044431 GO:0016279|GO:0018022
Psa5g2449 502 PIRSF RMT_SET 7 499 IPR011192 GO:0009507|GO:0030785
Psa5g2449 502 Pfam Rubisco LSMT substrate-binding 336 469 IPR015353 -
Psa5g2449 502 PANTHER UNCHARACTERIZED PUTATIVE METHYLTRANSFERASE 26 297 - -
Psa5g2449 502 ProSiteProfiles SET domain profile. 87 303 IPR001214 GO:0005515
Psa5g2449 502 PANTHER - 26 297 - -
Psa5g2449 502 SUPERFAMILY RuBisCo LSMT C-terminal, substrate-binding domain 333 500 IPR036464 -
Psa5g2449 502 Gene3D - 322 487 IPR036464 -
Psa5g2449 502 Gene3D set domain protein methyltransferase, domain 1 38 316 - -
Psa5g2449 502 Pfam SET domain 99 303 IPR001214 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g2449 77 272 NAC Transcription Factor Family AT3G56570 23.232 4.86e-08 53.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Psa5g2449 SET 2.9e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g2449 - - cam:101500121 869.381