Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g2437 ATGGGTAGGTGCCGAACAGCAGCACGCTCCGCGGACGACGACCCTAACCAGAGATCCAAGAGAAAAAAGGCTGCTTTAAATGCTGAGAATTTAGAAACTTCATCTGCAGGCACGGGAATAACTGATGGCAAGGTATCACTATATCACTGTAATTACTGCAACAAAGATATTTCAGGGAAGATTCGCATCAAATGCGTTGTGTGTCAAGATTTTGATCTCTGCATAGAGTGCTTCTCTGTTGGTGCTGAGTTGACACCTCATAAAAGCAATCATCCATATCGGGTTATGGATAATCTATCTTTTCCACTTATATGTCCAGATTGGAGTGCAGATGAAGAGATGTTACTTCTTGAGGCCATTGACATGTATGGATTTGGGAACTGGAATGAAGTTGCAGACAATGTTGGAACGAAAAGCAAATCGCAGTGTATTGATCACTATAAAGCTGAATATCTGAATTCGCCATGTTTTCCTCTACCTGATTTGTCTCATGTTATGGGAAAGAACAAAGATGAACTCCTTGCCATGGCAAAGGGACATCAAGTCAAGAAAGAATTTTCTCCAAACGCAGAGCTGACTTTGAAAGAAGAGCCTCTCTTTTCTGATGGAATAAACTCTGAAGAATCTAAGAAGGCAGAAGCCACTAATCAAACAACGTCTAGGCTAACCTCAGCAAGTGGTAAAGCGCTTTCAAGTTCAATCAAGAAGGCTTCCAATATGAGTCAGAATAATGATGGAGTTAAGGTGGAAGTTAAAGTGGAAGGTCGGAGCATTGGTGAAAAGAAACCTAAATTATCTGGGGAATATAGGCCTTCTATGAAAGCGTTGAGTGGATACAATTCTAAGAGAGGTGAATTCGATGTTGAATACGACAATGATGCTGAGCAAATTTTGGCAGAAATGGAGTTTAAAGACACTGACACTGAAGCTGAACGTGAAACAAAACTGCAAGTGCTGCGTATCTACTCAAAAAGGTTAGATGAACGCAAGCACAGAAAAAATTTTATACTTGAAAGGAATTTACTTTGTCCTGATCCTTTTGAGAAATCGCTTTCACCTGAAGAGCTTAAAATATGTCAAAAGTACAAGGTCTTCATGCGGTTTCACTCAAAAGAAGAACACCAGGAGTTGCTAAAAACTATTATTGAAGAACACCGGCTTGTCAAAAGAATACAAGACTTACAGGAAGCTCGAATTTCTGGCTGTGTAACTGCTGCTGATGCTTATCAATTTATTGAACAAAAGAGCACAAAAGAAGCTGAACAAGGTGGTCAGATTGGAACAAGTGGTAAGACTTTACAGAGGCCAAATTTTCCCAAAGTGGAACTTGGTAGCAGCCCACGCGATACCAAGGATACACCGACGGCCATACAAGCTATCACAACGACCCTCGAAGAATGGGATATAAGTGATTTTGAAGGGGCTGAATTTCTATCTGAATCTGAGATTAAGCTTTGTAATGAGATCAGATTGCTACCGCCACACTTCCTCCGCATAAAGCAGACCATGCAATTAGGAATTTCAAAGGGCAGTATAACCAAGAAGTCTGATGCATATCCACTGTTCAGGTTCTCTCCAAGCAAGATTGATAAGATTTATGACATGCTTATGGAAAACGAAGCTGGCCAAGCATAA 1635 0.4067 MGRCRTAARSADDDPNQRSKRKKAALNAENLETSSAGTGITDGKVSLYHCNYCNKDISGKIRIKCVVCQDFDLCIECFSVGAELTPHKSNHPYRVMDNLSFPLICPDWSADEEMLLLEAIDMYGFGNWNEVADNVGTKSKSQCIDHYKAEYLNSPCFPLPDLSHVMGKNKDELLAMAKGHQVKKEFSPNAELTLKEEPLFSDGINSEESKKAEATNQTTSRLTSASGKALSSSIKKASNMSQNNDGVKVEVKVEGRSIGEKKPKLSGEYRPSMKALSGYNSKRGEFDVEYDNDAEQILAEMEFKDTDTEAERETKLQVLRIYSKRLDERKHRKNFILERNLLCPDPFEKSLSPEELKICQKYKVFMRFHSKEEHQELLKTIIEEHRLVKRIQDLQEARISGCVTAADAYQFIEQKSTKEAEQGGQIGTSGKTLQRPNFPKVELGSSPRDTKDTPTAIQAITTTLEEWDISDFEGAEFLSESEIKLCNEIRLLPPHFLRIKQTMQLGISKGSITKKSDAYPLFRFSPSKIDKIYDMLMENEAGQA* 545
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g2437 544 MobiDBLite consensus disorder prediction 210 244 - -
Psa5g2437 544 ProSiteProfiles SANT domain profile. 103 155 IPR017884 -
Psa5g2437 544 SUPERFAMILY Homeodomain-like 101 152 IPR009057 -
Psa5g2437 544 Pfam Zinc finger, ZZ type 48 87 IPR000433 GO:0008270
Psa5g2437 544 MobiDBLite consensus disorder prediction 1 28 - -
Psa5g2437 544 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 108 156 IPR017930 -
Psa5g2437 544 Gene3D - 467 538 IPR036388 -
Psa5g2437 544 Gene3D - 106 150 - -
Psa5g2437 544 MobiDBLite consensus disorder prediction 1 27 - -
Psa5g2437 544 MobiDBLite consensus disorder prediction 419 452 - -
Psa5g2437 544 ProSitePatterns Zinc finger ZZ-type signature. 50 77 IPR000433 GO:0008270
Psa5g2437 544 CDD SANT 108 148 IPR001005 -
Psa5g2437 544 SUPERFAMILY Homeodomain-like 459 539 IPR009057 -
Psa5g2437 544 MobiDBLite consensus disorder prediction 201 244 - -
Psa5g2437 544 Gene3D - 43 96 IPR043145 -
Psa5g2437 544 ProSiteProfiles Myb-like domain profile. 108 151 IPR001005 -
Psa5g2437 544 ProSiteProfiles Zinc finger ZZ-type profile. 45 101 IPR000433 GO:0008270
Psa5g2437 544 PANTHER TRANSCRIPTIONAL ADAPTER ADA2B 1 539 IPR034318 GO:0003713|GO:0006357|GO:0035065
Psa5g2437 544 SMART zz_5 44 88 IPR000433 GO:0008270
Psa5g2437 544 SMART sant 104 153 IPR001005 -
Psa5g2437 544 PANTHER TRANSCRIPTIONAL ADAPTOR 2 ADA2 -RELATED 1 539 - -
Psa5g2437 544 SUPERFAMILY RING/U-box 48 111 - -
Psa5g2437 544 CDD ZZ_ADA2 48 96 IPR041983 -
Psa5g2437 544 Pfam Myb-like DNA-binding domain 107 148 IPR001005 -
Psa5g2437 544 MobiDBLite consensus disorder prediction 419 435 - -
Psa5g2437 544 PIRSF Txn_adaptor_ADA2 35 544 IPR016827 GO:0003713|GO:0006357|GO:0035065
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g2437 Psa-Chr5 186579634 186589471 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g2437 1 544 EF-hand Containing Proteins AT3G07740 52.205 0.0 542
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Psa5g2437 Myb_DNA-binding 1.1e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g2437 K11314 - gmx:100779424 806.979