Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g2430 ATGAGCTTCATCGACGACGGCATCGACTTAGACCCCTCCGATTTCGGCACATCAGTCCCTCTAAAGAAAGTCCCTAACGGCGACGTTTTCCAAGCATCCCGCGCCGGCGACGTCGACCGTCTCCGGTACCTTCTAGAATGCGGTGTTAACGTCAACGCCCGTGATCAATGGGACTCCGTCGCACTCTACTACGCTTGTCTCGCCGGTCACCTCGACGCCGCTCGTATGCTTCTCGAAAGCGGCGCTATTTGCTCCGAACATACCTTTGACGGTGACCGTTGTCATTACTCCGCTCTCAATTTGAAGGTTCGGAAGCTTCTCAAAGCGTTTGAAGCTCGTCCTCCGCCTTTGAATCCCTTGCAGTCTTCTCTAAGGGATACTTTCTTCGCTTGCCCGGCTAATTCGCATTCTGGTGGCTTTCAGTTTCCAGGTATTCCGTCCACTCAAGGGTTAAGCTCCAATTACTTTCCTCCAGATGTGGTTTTTAGTGTACAAGGAAGACCTATTGAAGCTCACAGGGTCATATTAAGTGCAAGGTCGCCATTTTTCAAGAAAAAATTTGAGACTGATTGGAAAGAGCGCAGCGAAGTAAGATTTTCACGGGAAAAGCTGTCGTATCCCGCGCTTTATAGCCTTATAAATTTCTTTTATTCAGATAGATTAGAGATTGCTGTGGATGACATGGATGATCTTGTGAGAATTTGCAAAGTATGCAAATGTGAATCTCTACAGAAAGTTCTCGAGAAAGAATTGACTCATCAAAAATATGCACTGTATAAAGCTTTGAGTGATGTAGACAATTCTCAAAAACGGTTTATTTTACAAGGTCTATCCCTTCCTGAAGAAGACAGACTTCCTGCTGCCTTGCGCAGAATCCTTCTGGCAGCCCTTTCAAATTCCACTCATGAAAATGGTCAAGATAATGGAATCGATAAATTGGTATCTAAGATGGATGCCATGCAGGTAGATAAACCTCTAAATGATCTTGCTGATGTTTGCATTAGAGTTGATAGAAAAAATTTCCGCTGCCATAAAGTTATTCTAGCATCAAGGTCAGAATATTTCAAAGCAAGACTATCACGTATGAAGGATTTCCATGAAGGGAAAGATGAATTGTATATTGACTTCCTTCCTTGTCTTGAAGAACATGACATGAGTGTGGAAGCATTTGAGAAAATGATTGAATATATGTACACCGATCGTTTGCAGGAAATAAATCCAGATCAGGCTGAGGAAATGTTTGATATTGCTTCTAGATACTTGATGTTTCCTCTTAAGCGTGCAGTGGCTGATGTCTTGGTGTCACACTTGGAAATGGCGTCACCTGAAGAACTTTGCCAATGGTTAATGCTAGCTGACATGTATGGTGTTTTGAAGATTCGGGAATTCTGCCTAGATACCATTGCCTGTAATTTTGAATTATTTGCGGATACTAAAGAATTCAGGGCAATGCTGCTGACTTTGCCTCCACCATCTGGAGACTCATCTCTTCGTACCACTGTCCCGAGCATGCCTGGATCTACCCTAAATAATGATCAAGGAAATCTTCTTGATGATTTACGTGATAAATGGCTTGAAATTGAAGCTGCTGAACTTGACGAAAGAGATGATAGTGCTTTGCAATTTGACAAGCGCCTAGAGATGCTTATGCTTGTTGCAAAGCATGAAAAGTCATCAGGTGATGTTGATTCAAATTGTGTTAATGATGTTCCATCCTTGGCTTTCTCTCCGATCACTGCTGTAATTTCAGGCGAACACAAAGAACCGTAG 1770 0.4299 MSFIDDGIDLDPSDFGTSVPLKKVPNGDVFQASRAGDVDRLRYLLECGVNVNARDQWDSVALYYACLAGHLDAARMLLESGAICSEHTFDGDRCHYSALNLKVRKLLKAFEARPPPLNPLQSSLRDTFFACPANSHSGGFQFPGIPSTQGLSSNYFPPDVVFSVQGRPIEAHRVILSARSPFFKKKFETDWKERSEVRFSREKLSYPALYSLINFFYSDRLEIAVDDMDDLVRICKVCKCESLQKVLEKELTHQKYALYKALSDVDNSQKRFILQGLSLPEEDRLPAALRRILLAALSNSTHENGQDNGIDKLVSKMDAMQVDKPLNDLADVCIRVDRKNFRCHKVILASRSEYFKARLSRMKDFHEGKDELYIDFLPCLEEHDMSVEAFEKMIEYMYTDRLQEINPDQAEEMFDIASRYLMFPLKRAVADVLVSHLEMASPEELCQWLMLADMYGVLKIREFCLDTIACNFELFADTKEFRAMLLTLPPPSGDSSLRTTVPSMPGSTLNNDQGNLLDDLRDKWLEIEAAELDERDDSALQFDKRLEMLMLVAKHEKSSGDVDSNCVNDVPSLAFSPITAVISGEHKEP* 590
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g2430 589 PANTHER ANKYRIN REPEAT AND BTB/POZ DOMAIN-CONTAINING PROTEIN 1 6 553 IPR044515 -
Psa5g2430 589 SUPERFAMILY Ankyrin repeat 31 109 IPR036770 -
Psa5g2430 589 Pfam BTB/POZ domain 155 254 IPR000210 GO:0005515
Psa5g2430 589 Pfam BTB/POZ domain 328 435 IPR000210 GO:0005515
Psa5g2430 589 CDD BACK 441 484 - -
Psa5g2430 589 ProSiteProfiles BTB domain profile. 158 225 IPR000210 GO:0005515
Psa5g2430 589 ProSiteProfiles BTB domain profile. 330 406 IPR000210 GO:0005515
Psa5g2430 589 SUPERFAMILY POZ domain 152 253 IPR011333 -
Psa5g2430 589 SMART BTB_4 158 255 IPR000210 GO:0005515
Psa5g2430 589 SMART BTB_4 330 437 IPR000210 GO:0005515
Psa5g2430 589 Pfam Ankyrin repeats (many copies) 30 78 IPR002110 GO:0005515
Psa5g2430 589 SUPERFAMILY POZ domain 327 437 IPR011333 -
Psa5g2430 589 Gene3D - 29 114 IPR036770 -
Psa5g2430 589 Gene3D Potassium Channel Kv1.1; Chain A 300 469 IPR011333 -
Psa5g2430 589 Gene3D Potassium Channel Kv1.1; Chain A 148 270 IPR011333 -
Psa5g2430 589 CDD BTB_POZ_ZBTB_KLHL-like 329 420 - -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Psa5g2430 BTB 1.5e-17 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g2430 K10520 - gmx:100812009 895.575