Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g2424 ATGTTTATACTGAGAGGATTACACCAACAAATTAATGACTTAAACGTTTCTTACAAAAGGGATACGAAGGAAACATACATGTCATTAGAAATGGTGTTCAATTTCGCTCTTAGTGAACATTGTGATGCAGCATATACACAAGCGTTGAAATTCTGCCCGCAACATTCCATTGCCAAACCTACAACCCAGTTTCAGTTTTCGAAAGCAATAGCTAATCCTCAGTTGAGAACTCCAACTTTGACTAAAGTTCCAGTTGCCGATGTGAATGTACCTGTCATAGGAGACCATGCAAGAGTTACTATTCTTCCACTATTTTCTCAGGCAACACCTTCTGCCAATCTGAATGCTGATGTCATTGCTAAGGAGGAGAATGTGGCGACGAATGTTATTGGAAATAGTTGCTCTTTAAGTTCTAACAATGCATTGAATGATCATCTAAATGGTCAGGTGGAAAATAAGTTTTGTGGCAATGCTTCTTTCACTGCTGATACGACACAGGGACAACATGACAGGTACAAACCAAGTTGGACATTTCTAGAAGGTGCTTACCACAATTGGAAAACTTCTGTATCTTGTTCCATTACAGTTGGTATGTTGGCTGAGATCGTGGTCATGTACCCAATTCAGCGCCGCAAGTACAGAAACGGAATTGACAACCTTTTGGTCCTTTTGATCGAAGGAATTCCTATTGCTACGCCCACTATGTTGTCTGTAACTATGGCCATTGGTTCACACAGGCTCTTTCAGCAAGGAGCTATTACCAAGCGAATGACTGCTATTGAAGAAATGGTTGGTATGGATGTACTTTGCAGTGACAAGACTGGTACACTTACACTTAACAAGTTGAGTGTTGATAAGAACTTGATTGAGGTCTTTGAAAAGGGTGTGGACAAGGAACATGTTATGCTTCTTGCTGCAAGGGCTTCCAGGATTGAAAACCAGGATGCCAAAATATCCGCCTCTCCAACCACAACCGATACCTGCAATCACCAGCAACATCCTGCAACATTGTCAACATTTTGCATCAATTAA 1032 0.4099 MFILRGLHQQINDLNVSYKRDTKETYMSLEMVFNFALSEHCDAAYTQALKFCPQHSIAKPTTQFQFSKAIANPQLRTPTLTKVPVADVNVPVIGDHARVTILPLFSQATPSANLNADVIAKEENVATNVIGNSCSLSSNNALNDHLNGQVENKFCGNASFTADTTQGQHDRYKPSWTFLEGAYHNWKTSVSCSITVGMLAEIVVMYPIQRRKYRNGIDNLLVLLIEGIPIATPTMLSVTMAIGSHRLFQQGAITKRMTAIEEMVGMDVLCSDKTGTLTLNKLSVDKNLIEVFEKGVDKEHVMLLAARASRIENQDAKISASPTTTDTCNHQQHPATLSTFCIN* 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g2424 343 Gene3D - 282 318 IPR023299 GO:0000166
Psa5g2424 343 Gene3D - 267 281 IPR023214 -
Psa5g2424 343 PANTHER PLASMA MEMBRANE ATPASE 190 317 - -
Psa5g2424 343 ProSitePatterns E1-E2 ATPases phosphorylation site. 272 278 IPR018303 -
Psa5g2424 343 Pfam lactate/malate dehydrogenase, alpha/beta C-terminal domain 84 120 IPR022383 GO:0016616
Psa5g2424 343 Gene3D - 65 129 IPR015955 GO:0003824|GO:0016616
Psa5g2424 343 SUPERFAMILY LDH C-terminal domain-like 80 119 IPR015955 GO:0003824|GO:0016616
Psa5g2424 343 SUPERFAMILY Calcium ATPase, transmembrane domain M 186 263 IPR023298 -
Psa5g2424 343 PANTHER CALCIUM-TRANSPORTING ATPASE 190 317 - -
Psa5g2424 343 Gene3D - 185 266 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g2424 Psa-Chr5 185929501 185931073 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g2424 192 316 Primary Pumps ATPases AT2G07560 84.000 2.28e-65 220
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g2424 K01535 - csin:114306865 219.55