LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Psa5g2413	ATGCGATCTTCATGGGCTGATTTGGCTGCAAATTCAGCGGCCGAAAATGCACCACTTCCAACTTCTGTTAACAATGCAACCTCTCAACCTCCTTCTCGACCTGTTTATGTTCCTCCTCATCTGAGGAACCGTGGAGCTACAGCACCGCCGCCGCTACCTGCTTCAGCTTCGTCTGGGAATTTTAATGCTTCATCTGGTAACGATAACTCCGGATCGCGTTGGGCGCCGCCGCCGAGGAACGACTACCGTGCTCGTCCTGGTGGTTATGGGAACAGGACTGGTGGTTGGGATAGGCGTGAAGCTAATCCTTTTGCAGATCAGGATGATACTGAGGAGCCGGTTACTCAAGAGGAGCAGGAGAATACGGGGATAAACTTTGATGCTTATGAGGATATTCCGGTGGAGACTAGTGGTGGTAATGTTCCTCCGCCGGTGAATACTTTTGCTGAGATTGACTTGGGTGATGCACTTAATGATAATATAAGACGGTGCAAATATGTGAAGCCGACGCCGGTTCAGCGGCATGCAATACCGATATCTCTTGCAGGAAGGGATTTGATGGCTTGTGCGCAGACTGGTTCGGGAAAGACGGCTGCTTTTTGTTTTCCAATTATCAGTGGAATTATGACCGGACAACCTGCTCAGAGGCCGCCTCGCGGGGTGCGTACTGTGTGTCCACTTGCCCTTGTTCTCTCTCCAACTAGAGAGCTATCGATGCAGATACACGAGGAGGCTAGGAAATTTTCGTACCAGACAGGGGTTAGGGTGGTTGTTGCTTATGGTGGAGCTCCAATAAACCAGCAGCTACGAGAGCTTGAGAGAGGGGTGGACATTCTTGTCGCGACTCCTGGAAGGTTGGTAGATTTGTTGGAAAGAGCTAGAGTTTCACTGTCGATGATTAGGTATCTTGCCTTAGATGAGGCAGATAGGATGCTGGATATGGGTTTTGAGCCACAGATAAGGAAGATTGTGGAACAAATGGACATGCCTCCAGCAGGGGCGAGACAGACTATGCTGTTCAGTGCCACTTTTCCAAAAGAGATACAGAGACTAGCCTCTGATTTCCTTTCAAACTATATTTTTCTGGCTGTTGGAAGGGTGGGATCAAGTACCGATTTAATTGACCAAAGAGTTGAGTATGTTCAAGAGTCTGACAAGAGAAGCCATCTCATGGACCTTCTTCATGCACAAAGAGCAAATGGTGTACAAGGAAAGCAAGCTTTGACTTTAGTTTTTGTCGAGACAAAGAAGGGAGCTGATGCTCTGGAACACTGGTTGTGTCTTAATAATTTTCCAGCAACTACTATTCACGGCGACAGGACACAACAGGAAAGAGAAGCTGCATTAAAGTCATTTAAAAGTGGCAAGACCCCCATATTGGTTGCCACTGATGTGGCTGCACGTGGACTTGATATTCCTCATGTTGCCCACGTAGTTAACTTTGACCTTCCCAATGATATTGATGATTACGTACACCGTATTGGAAGGACAGGGAGAGCAGGAAAGAAAGGTCTTGCAACTGCATTCTTTAATGAAAACAATACATCCCTCGCAAGGTCACTAGGAGATTTGATGCAAGAAGCAAATCAGGAAGTACCTGCCTGGCTTACGCGGTTTGCTGCACGATCATCCTATGGTGGTGGAAAGAACCGTCGATCAGGAGGCCGATTTGGTGGTCGTGACTTTCGAAGAGATGGTACATTTAGTAGGGGTGGTTCTGATTACCATGGTGCAGGAAATAGCAGTGGTGGATATGGGGCTTCTGGTGGGTATGGTGGTGGATATGGTGGCGGGTATGCAGGAAATAGCGCGGGTCCTGGGGTGACCAGTGCATGGGACTGA	1842	0.4826	MRSSWADLAANSAAENAPLPTSVNNATSQPPSRPVYVPPHLRNRGATAPPPLPASASSGNFNASSGNDNSGSRWAPPPRNDYRARPGGYGNRTGGWDRREANPFADQDDTEEPVTQEEQENTGINFDAYEDIPVETSGGNVPPPVNTFAEIDLGDALNDNIRRCKYVKPTPVQRHAIPISLAGRDLMACAQTGSGKTAAFCFPIISGIMTGQPAQRPPRGVRTVCPLALVLSPTRELSMQIHEEARKFSYQTGVRVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLSMIRYLALDEADRMLDMGFEPQIRKIVEQMDMPPAGARQTMLFSATFPKEIQRLASDFLSNYIFLAVGRVGSSTDLIDQRVEYVQESDKRSHLMDLLHAQRANGVQGKQALTLVFVETKKGADALEHWLCLNNFPATTIHGDRTQQEREAALKSFKSGKTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKKGLATAFFNENNTSLARSLGDLMQEANQEVPAWLTRFAARSSYGGGKNRRSGGRFGGRDFRRDGTFSRGGSDYHGAGNSSGGYGASGGYGGGYGGGYAGNSAGPGVTSAWD*	614

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Psa5g2413	613	Pfam	Helicase conserved C-terminal domain	386	501	IPR001650	-
	Psa5g2413	613	CDD	DEADc_DDX3_DDX4	147	368	IPR044763	GO:0003724\|GO:0005524
	Psa5g2413	613	CDD	SF2_C_DEAD	374	510	-	-
	Psa5g2413	613	ProSiteProfiles	Superfamilies 1 and 2 helicase C-terminal domain profile.	373	540	IPR001650	-
	Psa5g2413	613	PANTHER	ATP-DEPENDENT RNA HELICASE DBP3	51	577	-	-
	Psa5g2413	613	ProSiteProfiles	Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile.	177	362	IPR014001	-
	Psa5g2413	613	Gene3D	-	365	545	IPR027417	-
	Psa5g2413	613	SMART	ultradead3	165	377	IPR014001	-
	Psa5g2413	613	PANTHER	DEAD-BOX ATP-DEPENDENT RNA HELICASE-LIKE PROTEIN	51	577	-	-
	Psa5g2413	613	SMART	helicmild6	420	501	IPR001650	-
	Psa5g2413	613	Gene3D	-	101	364	IPR027417	-
	Psa5g2413	613	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	227	516	IPR027417	-
	Psa5g2413	613	MobiDBLite	consensus disorder prediction	1	31	-	-
	Psa5g2413	613	MobiDBLite	consensus disorder prediction	53	74	-	-
	Psa5g2413	613	Pfam	DEAD/DEAH box helicase	170	351	IPR011545	GO:0003676\|GO:0005524
	Psa5g2413	613	MobiDBLite	consensus disorder prediction	1	98	-	-
	Psa5g2413	613	ProSiteProfiles	DEAD-box RNA helicase Q motif profile.	146	174	IPR014014	GO:0003724

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Psa5g2413	Psa-Chr5	185380103	185386751	Dispersed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Psa5g2413	135	533	Eukaryotic Initiation Factors Gene Family	AT3G19760	32.250	6.35e-63	211

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Psa5g2413	K11594		-	gmx:100795756	936.791