Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g2412 ATGTCTGACCATATTGCTGAGAGAAATCAAGAGCTTCAACTATTCACTGCACCACAACCAGAAATCGAAGCACCAAACACTAATACCACCGTAGATAACAACCATCATGCATCTTCCTCCACTGCCTCTCGCCGCCCCCGAGGGCGTCCTCTTGGCTCTAGGAACAAACCCAAGATGCCTGTCATAGTAACACAAGACAACACTAATGTTGTAAATTCTCATATGCTTGAGATTAGTGTTGGAGACGACATATCAAAAAGTGTCTTTGATTACGCTCATCGTCAGGGAAGGGGCATATGTATTCTCAATGGAGATGGATTGGTGACACATGTTAGACTTCGCCTACCCACGGGAAGAATTGTAACCCTACAAGGAAGGTTTGAGATTCTTTTGATATCTGGGACAATTTTCCCAACGCCAACACCAATGAATGTTGGAGGATTGACAATTTACTTATCAGGAACAAATGAACAAGTGATTGGAGGAAGTGTGATGCCCCCTTTGGTGGCTTCAAGTCTGGTGACTCTGACAGTTGCTTCCTTTGCAAACACTACACCAGAAAAGCTTTCTTCAATAGTAATTGATCGAAACGAACATCAACTCCCATGCCTCAATGGAGCTGGACAAGTGAGAGTAGGTGATGATGATTTGTTCAATGTTGGAGATTCAACATCTGGAAAGAGAAACATGATGAGTAGCAACATCAGTTATCCATCATCCTCTACTCAAGATTGTATATTCGGATGGGATACTACTGCAACCATAATTCCCCCATCCAAACATCCCCGTTTCTAG 795 0.4314 MSDHIAERNQELQLFTAPQPEIEAPNTNTTVDNNHHASSSTASRRPRGRPLGSRNKPKMPVIVTQDNTNVVNSHMLEISVGDDISKSVFDYAHRQGRGICILNGDGLVTHVRLRLPTGRIVTLQGRFEILLISGTIFPTPTPMNVGGLTIYLSGTNEQVIGGSVMPPLVASSLVTLTVASFANTTPEKLSSIVIDRNEHQLPCLNGAGQVRVGDDDLFNVGDSTSGKRNMMSSNISYPSSSTQDCIFGWDTTATIIPPSKHPRF* 265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g2412 264 MobiDBLite consensus disorder prediction 7 46 - -
Psa5g2412 264 Pfam Plants and Prokaryotes Conserved (PCC) domain 73 182 IPR005175 -
Psa5g2412 264 ProSiteProfiles PPC domain profile profile. 68 202 IPR005175 -
Psa5g2412 264 MobiDBLite consensus disorder prediction 1 59 - -
Psa5g2412 264 SUPERFAMILY AF0104/ALDC/Ptd012-like 69 189 - -
Psa5g2412 264 CDD DUF296 72 181 IPR005175 -
Psa5g2412 264 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 29 24 242 - -
Psa5g2412 264 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 24 242 IPR014476 GO:0003680
Psa5g2412 264 Gene3D - 72 199 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g2412 Psa-Chr5 185271655 185272651 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g2412 38 189 AT-hook Motif Nuclear Localized (AHL) Family AT1G76500 53.988 3.85e-45 152
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g2412 - - cam:101492608 201.445