Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g2408 ATGGAGGAAACAATGGCAGCAAGATATTGGTGTCACGCTTGTTCTCAAATAGTCAGTCCTATCATGGGAATGGAGATGAAATGTCCAGTTTGCCAAAGTGGATTTATTGAAGAAATGAGCAGTGCAACTGGTATCAATGACTTGCAAAATACACCAGAAAATGATTTTGGATCGGATCGTTCTCCCTCCCTTTGGGCACCAATCTTGCTAGGCATGATGGGCAATCCGCGGCTTCGTCGGAGATTGAGACGGATAGAGCTTGAAGAGGATTATGATAGTGGGAATCGCGATGGTGATAATGGTAATGGTGGTGTAGGACATTATGATCGAGAGCTCGAGTCCATCCTTCGAAGGAGGAGAAGAAGCTCTGCTACTATTCAGCAATTGCTCCAAGGCATAAGAGCTGGACTGACATCTGAGTCGCATGAGAATACGGATAGGGATGACCGTGTTAGGGAAAGAGAAAGAGAGCATGTAATATTGATTAATCCTTTTAATCAGACTATTATTGTTCAAGGCTCCTATGATTCAAACCGGGACCAAAGTGATAATCATAACCCCATTGGGTCTTTGGGTGACTATTTTGTAGGGCCTGGTTTGGATCTATTGTTGCAACATTTGTCTGAGAATGACCCTAATAGGTATGGAACTCCACCTGCTCCAAAGGAAGCCGTTGAAGCTTTACCAACTGTGAAAATCAATGAGAATATGCAGTGTTCTGTCTGTTTGGATGATTTTGAAGTTGGTTCCGATGCCAAAGAGATGCCATGTAAACATAGGTTTCATAGTGCTTGTATCCTGCCCTGGCTGGAGCTTCATAGTTCTTGTCCGGTTTGCAGATCTCAATTGCGAGTGGATGAACCCAAGCAAAACTCTGATGTGTCAAGGAATAATAGAAATCAAAGGGAGAATGAAAATATTGGACATGCCAATAATGCTGAAAGGGATAGTGAAGGGAGAAGTGCAAGTGGGGGTAGAAGATTCTCATTTCCATGGCCTTTCAATGGATTATTTTCATCTTCATCATCATCTAGTTCAAATGCCAATGGAAACAGTACTCACCCAGAAAGAAACTGA 1077 0.4271 MEETMAARYWCHACSQIVSPIMGMEMKCPVCQSGFIEEMSSATGINDLQNTPENDFGSDRSPSLWAPILLGMMGNPRLRRRLRRIELEEDYDSGNRDGDNGNGGVGHYDRELESILRRRRRSSATIQQLLQGIRAGLTSESHENTDRDDRVREREREHVILINPFNQTIIVQGSYDSNRDQSDNHNPIGSLGDYFVGPGLDLLLQHLSENDPNRYGTPPAPKEAVEALPTVKINENMQCSVCLDDFEVGSDAKEMPCKHRFHSACILPWLELHSSCPVCRSQLRVDEPKQNSDVSRNNRNQRENENIGHANNAERDSEGRSASGGRRFSFPWPFNGLFSSSSSSSSNANGNSTHPERN* 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g2408 358 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 2 339 - -
Psa5g2408 358 Pfam zinc-ribbon 8 39 IPR039525 GO:0061630
Psa5g2408 358 ProSiteProfiles Zinc finger RING-type profile. 239 280 IPR001841 -
Psa5g2408 358 Pfam Ring finger domain 238 280 IPR001841 -
Psa5g2408 358 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 206 285 IPR013083 -
Psa5g2408 358 MobiDBLite consensus disorder prediction 286 322 - -
Psa5g2408 358 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 2 339 - -
Psa5g2408 358 MobiDBLite consensus disorder prediction 286 324 - -
Psa5g2408 358 SMART ring_2 239 279 IPR001841 -
Psa5g2408 358 CDD RING-H2_RNF126_like 238 280 - -
Psa5g2408 358 SUPERFAMILY RING/U-box 228 290 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g2408 Psa-Chr5 185099042 185100118 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g2408 136 286 C3H Transcription Factor Family AT1G26800 37.908 5.72e-26 101
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g2408 K11982 - gmx:100784876 471.855