Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g2370 ATGGTGACTATACCTGGCTTCGAAGAAGCTATTGAGCCACCAGTTTTACCTCCATCACCTCCTGATGCGCTGCCTGAAACGGAAACAGAACAAATAGCTCTACCAACCTATTCTATTATCAGTAGGCCCAGTGTTGGTACCACAGGAAAACACATACCTTTGCTTGCGAATCTCTTCAAAGTTGCTGCTGATGCTATAGATGCAACTTTTTTCCAGTATAGTGTTACTATCACTTCGGAAGATAAAAGAGCGGTTGAAAGCAAGGGCTTAGGGAGAAAACTGATTGATAGGCTTCACCAAACATACTCTTCTGAACTTGGTGGCAAAAGCTTTGCATATGATGGAGAAAGAACATTGTACACGGTGGGTCCTCTTCCAGATGATAAGTTTGAGTTCAAAGTTCTACTTGAAGAAATATTTTCATTTCCAAAGTGTAGTTCTGAGAGTCCTGGTCCCGATGGAATCCCTTGTGAGGAAAATAAAAGGACAAAACGTTCTTTTCAGTCAAAAGCATTCACAGTGGAGATAAGTTTTGCTGCCAAAATACCCTTGCAGTCCATTGCCCTTGCCCTTAAAGGGATTGAGTCATATGCAAATTCTCAGGATGCATTGAGGGTGTTTGATATCGTACTGAGGCAGCGAGCAGCCAATAGAGGGTGTCTCTTGGTAAGGCAGTCTTTTTTTCATGATGACTCGAGAAATTTCATTGATGTTGGAGGCGGAGTAACTGGAGTTCGCGGTTTTCATTCCAGTTTCCGTCTTACAGAAGGAGGATTGTCTCTTAATATGGATGTGTCCACAACGATGATCTTAAAACCTGGACCTGTAATTGATTTTCTCCTAACACACCAGAATGTGAGGGAACCTCGTCATATTGACTGGGCAAAGGCCAAGAGAATCCTTAAAAATTTAAGAGTTCGTGCTACACATTGTAACCAAGAATTCAAAATTGCTGGCTTCAGTGAGAAACCCTGCATTCAACAACTTTTTACTATGAAGATAAAGAGTGGAGAAGACAATAATATGGAGCAGACAGTGGATCTTACTGTATATGAGTATTTTGCTAAACACCGCGACATTGAGCTGACCTCTTCTGCTTACCTTCCATGTCTTGATGTTGGGAAGCCAAATCGGCCAATCTTTTTGCCCCTGGAGCTATGTATATTTATTCCCCTCCAGCGGTATACAAAGGCATTATCTCCTGCGCAAAAAGCATCGTTAGTAGAACAATCACGCCAAAAGCCTCAAGAAAGAATCAAAATTCTGACAAATGCTATAGGAAATTCTTGCTATGAAGATGATGCTGTTCTTGCGGCATGTGGCATTTCTATTGACAAACAATTCACTCCAGTTGATGGTCGAGTTCTTGAGACACCAAAGTTGAAGGTAGGTAAGAATGAAGACTGCTTTCCCAATAATGGAAGGTGGAACTTTAAAAAAAAGACACTTCTAGAACCATCACACATTGATTATTGGGCCGTTGTCAACTTTTCTGCACAATGTGATACTAGTTATATAACGAGGGAGCTGATTAAATGTGGAATGAGTAAGGGAATGAATATTGAACGACCATATACTTTAATAGAGGAAGACGCACAGACGAGAAAATTTAACCCTGTTGCAAGGGTTGAAAAGATGTTTGACCTACTGACATCAAAACTTACTAAAGAACCAAAGTTGATTCTTTGTGTCTTGCCAGAGAGGAAAAACTGTGACATCTATGGGCCTTGGAAAAGGAAGTGTTTGTGTGAAGCTGGGGTTGTCACACAGTGCATTTCCCCTCTCAAGATCACCGATCAATATCTTACTAATGTGCTTCTTAAAATCAATTCTAAGCTCGGAGGAATAAATTCTTTGCTGGCAATAGAGCATTCTGGGCATCTTCCCTTGATTAAAGATACCCCAACAATGATTTTAGGGATGGATGTCTCTCATGGTTCCCCTGGCCAATCAGATATTCCATCAATAGCAGCTGTTGTTGGATCTCGATGTTGGCCTCTAATTTCGAGGTATAGAGCATCTGTGAGATCACAGTCACCTAAGGTGGAAATGATTGATGCTCTATTCAAGCCTTTGGATGATGGGAATGATGATGGTATTATCAGGGAATTGCTTCTAGATTTCTATAGTTCTAGTAATGGACGCAGGCCAACTCAAATTATTCTCTTCAGGGATGGAGTTAGTGAATCACAATTTAACCAGGTGTTGAACATAGAGCTTAACCAGATAATAAAGGCTTATAAACATATTGGTGGTGTTGATGTTGATGTTCCCAAGTTCACTGTAATTGTGGCACAGAAGAATCACCATACAAAGTTGTTTCAAGCTAATGCTCTGGAAAACGTTCCTCCTGGGACAGTTGTCGACACAAAAGTTGTGCATCCAAGAAATTATGATTTCTACATGTGTGCTCATGCTGGAATGATTGGAACGTCTAGGCCTGTACATTATCATGTGTTGCTTGATGAAATTGGATTCTCGCCAGATGGCTTGCAAAATTTGATCAATTCGCTGTCTTACGTGAACCAAAGGAGCACTACCGCAACCTCAATTGTGGCACCTATATGCTATGCCCACCATGCTGCAGCTCAGATGGCACAATTTCTGAATTTCGATGATTTATCAGAGAGAAACATCCCCATTCCAGAGCTTCCTAGGTTACATAAGAATGTGAAGACCTCCATGTTCTTCTGTTGA 2697 0.4105 MVTIPGFEEAIEPPVLPPSPPDALPETETEQIALPTYSIISRPSVGTTGKHIPLLANLFKVAADAIDATFFQYSVTITSEDKRAVESKGLGRKLIDRLHQTYSSELGGKSFAYDGERTLYTVGPLPDDKFEFKVLLEEIFSFPKCSSESPGPDGIPCEENKRTKRSFQSKAFTVEISFAAKIPLQSIALALKGIESYANSQDALRVFDIVLRQRAANRGCLLVRQSFFHDDSRNFIDVGGGVTGVRGFHSSFRLTEGGLSLNMDVSTTMILKPGPVIDFLLTHQNVREPRHIDWAKAKRILKNLRVRATHCNQEFKIAGFSEKPCIQQLFTMKIKSGEDNNMEQTVDLTVYEYFAKHRDIELTSSAYLPCLDVGKPNRPIFLPLELCIFIPLQRYTKALSPAQKASLVEQSRQKPQERIKILTNAIGNSCYEDDAVLAACGISIDKQFTPVDGRVLETPKLKVGKNEDCFPNNGRWNFKKKTLLEPSHIDYWAVVNFSAQCDTSYITRELIKCGMSKGMNIERPYTLIEEDAQTRKFNPVARVEKMFDLLTSKLTKEPKLILCVLPERKNCDIYGPWKRKCLCEAGVVTQCISPLKITDQYLTNVLLKINSKLGGINSLLAIEHSGHLPLIKDTPTMILGMDVSHGSPGQSDIPSIAAVVGSRCWPLISRYRASVRSQSPKVEMIDALFKPLDDGNDDGIIRELLLDFYSSSNGRRPTQIILFRDGVSESQFNQVLNIELNQIIKAYKHIGGVDVDVPKFTVIVAQKNHHTKLFQANALENVPPGTVVDTKVVHPRNYDFYMCAHAGMIGTSRPVHYHVLLDEIGFSPDGLQNLINSLSYVNQRSTTATSIVAPICYAHHAAAQMAQFLNFDDLSERNIPIPELPRLHKNVKTSMFFC* 899
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g2370 898 ProSiteProfiles Piwi domain profile. 560 870 IPR003165 GO:0003676
Psa5g2370 898 Pfam Piwi domain 560 869 IPR003165 GO:0003676
Psa5g2370 898 Gene3D - 455 621 - -
Psa5g2370 898 Pfam PAZ domain 277 407 IPR003100 GO:0005515
Psa5g2370 898 SUPERFAMILY Ribonuclease H-like 544 868 IPR012337 -
Psa5g2370 898 Pfam N-terminal domain of argonaute 50 211 IPR032474 -
Psa5g2370 898 Pfam Argonaute linker 1 domain 223 270 IPR014811 -
Psa5g2370 898 Gene3D paz domain 267 395 - -
Psa5g2370 898 SMART Piwi_a_2 560 870 IPR003165 GO:0003676
Psa5g2370 898 Pfam Argonaute linker 2 domain 417 462 IPR032472 -
Psa5g2370 898 CDD Piwi_ago-like 436 857 IPR045246 -
Psa5g2370 898 SUPERFAMILY PAZ domain 268 428 IPR036085 GO:0005515
Psa5g2370 898 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 32 897 - -
Psa5g2370 898 ProSiteProfiles PAZ domain profile. 301 391 IPR003100 GO:0005515
Psa5g2370 898 PANTHER PROTEIN ARGONAUTE 6 32 897 - -
Psa5g2370 898 Gene3D - 627 898 IPR036397 GO:0003676
Psa5g2370 898 CDD PAZ_argonaute_like 273 387 - -
Psa5g2370 898 SMART DUF1785_2 221 273 IPR014811 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g2370 Psa-Chr5 183204810 183214772 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g2370 42 898 Eukaryotic Initiation Factors Gene Family AT1G48410 35.816 5.81e-153 475
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g2370 K11593 - gmx:100778875 1373.61