Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g2365 ATGAGGAATCCTTCATCGTCAACAACTCAAGCCAAATCAGCATCAACGAATTCAAGTAAGAACCAGAAGAAGAAGAAGAATAGTAACAATGGAAGCAGCAGTACAGCTACTACCACTCCGTGTTGCAGTAAATTAGGGTTGAAAAGAGGACCGTGGACTGCAGAAGAAGACCAGGTATTATCAGATTACATTAAGAAAGAAGGTGAAGGTCGCTGGAGAACTCTCCCCAAACAAGCTGGCCTTCTCCGGTGCGGCAAAAGCTGCCGCCTCCGTTGGATGAATTATCTTCGTCCGTCCGTCAAACGCGGTCAGATCGCCCCTGATGAAGAAGATCTCATTCTCCGTCTTCACCGTCTTCTCGGTAACAGGTGGTCATTGATAGCCGGAAGAATTCCAGGAAGAACCGATAATGAGATTAAGAATTATTGGAACACGCATCTCAGCAAGAAACTCATTAATCAAGGAATTGATCCTAGAACACACAAGCCTCTTGATGATAGTAATAACCACTCTTCTTCACCTTCGATAATCCCAAATATTAATCACCAAATCCCTCCTTTTACATCTTCTGCTTCTCCAGATCATCCTCCTATTACTACTATGACTAACAATGAATCTGATGATCATCACTTAACACAATATCATAGTCATAATAATCATTATCCAAAGCAGCAACAACAACAACAAGCTCAGGAGTTTAATGGTGCTAACTGTGATAGCTTAATTAGTAGTGATGTTTCTGCAATGGATCATGATCTGCTTAACAACAACAGTAAAGGCGATTACAACGACATTAGTACCTGTTGTGATGATGTGTTTACTTCCTTCCTTGATTCATTGATCAACGAGGATGCTTTTGCTACACACCGATCAGAGAATGATCCTTTGATCCTGTCTTCTGCACCACCGTCTTTGTGGGAATCGCCACTCATCAATATGTCCACTCATATTTCAACCAAAAACCACGACGACTCACCCAAGACGGGACAGATTCATGATGCATAG 1005 0.4209 MRNPSSSTTQAKSASTNSSKNQKKKKNSNNGSSSTATTTPCCSKLGLKRGPWTAEEDQVLSDYIKKEGEGRWRTLPKQAGLLRCGKSCRLRWMNYLRPSVKRGQIAPDEEDLILRLHRLLGNRWSLIAGRIPGRTDNEIKNYWNTHLSKKLINQGIDPRTHKPLDDSNNHSSSPSIIPNINHQIPPFTSSASPDHPPITTMTNNESDDHHLTQYHSHNNHYPKQQQQQQAQEFNGANCDSLISSDVSAMDHDLLNNNSKGDYNDISTCCDDVFTSFLDSLINEDAFATHRSENDPLILSSAPPSLWESPLINMSTHISTKNHDDSPKTGQIHDA* 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g2365 334 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 97 151 IPR017930 -
Psa5g2365 334 PANTHER TRANSCRIPTION REPRESSOR MYB5-LIKE 33 293 - -
Psa5g2365 334 CDD SANT 107 147 IPR001005 -
Psa5g2365 334 Pfam Myb-like DNA-binding domain 106 147 IPR001005 -
Psa5g2365 334 Pfam Myb-like DNA-binding domain 49 96 IPR001005 -
Psa5g2365 334 CDD SANT 51 96 IPR001005 -
Psa5g2365 334 ProSiteProfiles Myb-like domain profile. 97 147 IPR001005 -
Psa5g2365 334 SMART sant 48 98 IPR001005 -
Psa5g2365 334 SMART sant 101 149 IPR001005 -
Psa5g2365 334 Gene3D - 49 101 - -
Psa5g2365 334 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 44 96 IPR017930 -
Psa5g2365 334 SUPERFAMILY Homeodomain-like 46 143 IPR009057 -
Psa5g2365 334 Gene3D - 106 174 - -
Psa5g2365 334 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 33 293 - -
Psa5g2365 334 MobiDBLite consensus disorder prediction 1 39 - -
Psa5g2365 334 ProSiteProfiles Myb-like domain profile. 44 96 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g2365 Psa-Chr5 182854842 182856437 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g2365 38 296 MYB Transcription Factor Family AT3G13540 54.406 2.40e-90 268
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Psa5g2365 Myb_DNA-binding 9.6e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g2365 K09422 - gmx:100797847 299.671