Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g2363 ATGTGGGGGTATGAAGAAGGGACGTGGGGGTATGAAGAAGGGACGTGGGGAAGAGGAGGTGGAGGAGGAGGAGGAGGAGGACGCAGTCCAAGTCCCCGTCGCCGTTACGCCCCCCGTGAAAGTGATCTACCTACCAGTCTTCTTGTTCGTAACCTTCGCCATGACTGTAGGCCTGAAGATCTTCGTAGACCCTTTGGTCAATTTGGTCCTCTCAAAGACATTTATCTCCCCAAAGATTATTACACTGGACAACCCCGTGGGTTTGGTTTTATCCAATTTGTGGATCCTGCTGATGCTGCAGATGCTAAATATCATATGGATGGTCAAGTTCTTCTTGGTAGGGAGCTGACTGTTGTTTTTGCTGAGGAGAATCGAAAGAAGCCTACTGAGATGAGGGTCAGGGAGAGAAGTGGTCGGTATTCTGATCGAAGGAGGACTCCCCCACGTTATTCTCGTTCACCCCGCTATTCCAGGTCTCCACCTCGTCATAGAACTCACTCCCGCAGCCGTGACTATGATTCCCCTCCTCCTAAACGAAGGGAATATTCAAGATCTCTATCACCTGAGGATAGAAGGCACAGTAGAGAAAGATCACACCACAGCAGGGAGAGGTCATACTCACGCTCTCCACTCAATAATGGGGATGCAAGAAGCCGTAGTCCGAGTCCAGAGAAAGGCCCAGTGCTGAGCAGAAGTCCAAGTCCAAACCGTGAAGGCAGGGAATCAGCCCGCAGTAGGTCCCCCAGTCAGTGA 753 0.5139 MWGYEEGTWGYEEGTWGRGGGGGGGGGRSPSPRRRYAPRESDLPTSLLVRNLRHDCRPEDLRRPFGQFGPLKDIYLPKDYYTGQPRGFGFIQFVDPADAADAKYHMDGQVLLGRELTVVFAEENRKKPTEMRVRERSGRYSDRRRTPPRYSRSPRYSRSPPRHRTHSRSRDYDSPPPKRREYSRSLSPEDRRHSRERSHHSRERSYSRSPLNNGDARSRSPSPEKGPVLSRSPSPNREGRESARSRSPSQ* 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g2363 250 MobiDBLite consensus disorder prediction 13 42 - -
Psa5g2363 250 MobiDBLite consensus disorder prediction 207 229 - -
Psa5g2363 250 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 47 116 IPR000504 GO:0003723
Psa5g2363 250 MobiDBLite consensus disorder prediction 125 149 - -
Psa5g2363 250 MobiDBLite consensus disorder prediction 125 250 - -
Psa5g2363 250 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 45 123 IPR000504 GO:0003723
Psa5g2363 250 MobiDBLite consensus disorder prediction 166 206 - -
Psa5g2363 250 SMART rrm1_1 46 119 IPR000504 GO:0003723
Psa5g2363 250 PANTHER SERINE/ARGININE-RICH SC35-LIKE SPLICING FACTOR SCL30A 35 236 - -
Psa5g2363 250 Gene3D - 25 136 IPR012677 -
Psa5g2363 250 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 35 236 - -
Psa5g2363 250 SUPERFAMILY RNA-binding domain, RBD 43 150 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g2363 Psa-Chr5 182837683 182840077 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g2363 45 134 Eukaryotic Initiation Factors Gene Family AT4G34110 33.333 8.54e-09 53.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g2363 K12900 - gmx:100775883 306.219