Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g2356 ATGTATTGTTGTTACGGAATAACGATCCAACCAACCATAACACCACATTCCATCACATATTTAAGCATTAGACCCAAATTCGTAAAACTCCGGATCCGAAATTATGGTTATGGTTCATTACTCAAAGTGAAAGCTTCGATTAACAACAATAATAACCCCATTTCGTCCAAATCTGAGTTAACCTTGTATGAAATTTTGGGTATACCCAAATCCGTATCCATGGTGGATTTGAAGCGCGCTTATAAGCATGAGGCTCGAAAGTATCACCCAGATTTGTCACCACCGGGTCAGGTTAAAGAGTATACAAAGAGGTTCATTATGGTGCGGGAGGCTTATGAGATGTTGTCAGATCCAGTAACGAGAGCTATTTATGATAGAGATTTGGATAAAGGGATTTCGTTCACATTTTCTACTAGTAGACCCTACTGTCATCGCACTAAACATGATCATGATCAGGTGAGTGAAGAAAAGAAAGAATGGAAAAGTGTGTGGGAATCTCAACTATGGGAGTTGGAAAGAAGAAGTGATTGCAAAGAGCGTAGAGGAAATATGACTTGGGGTGCTCGAATGCGTCAATGTCGTACTCATTAG 591 0.3993 MYCCYGITIQPTITPHSITYLSIRPKFVKLRIRNYGYGSLLKVKASINNNNNPISSKSELTLYEILGIPKSVSMVDLKRAYKHEARKYHPDLSPPGQVKEYTKRFIMVREAYEMLSDPVTRAIYDRDLDKGISFTFSTSRPYCHRTKHDHDQVSEEKKEWKSVWESQLWELERRSDCKERRGNMTWGARMRQCRTH* 197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g2356 196 CDD DnaJ 61 117 IPR001623 -
Psa5g2356 196 ProSitePatterns Nt-dnaJ domain signature. 105 124 IPR018253 -
Psa5g2356 196 SUPERFAMILY Chaperone J-domain 58 137 IPR036869 -
Psa5g2356 196 Pfam DnaJ domain 62 125 IPR001623 -
Psa5g2356 196 ProSiteProfiles dnaJ domain profile. 61 128 IPR001623 -
Psa5g2356 196 Gene3D DnaJ domain 45 148 IPR036869 -
Psa5g2356 196 PRINTS DnaJ domain signature 63 81 IPR001623 -
Psa5g2356 196 PRINTS DnaJ domain signature 81 96 IPR001623 -
Psa5g2356 196 PRINTS DnaJ domain signature 100 120 IPR001623 -
Psa5g2356 196 PANTHER CHAPERONE PROTEIN DNAJ 20, CHLOROPLASTIC 9 194 - -
Psa5g2356 196 PANTHER CHAPERONE PROTEIN DNAJ 20 CHLOROPLASTIC 9 194 - -
Psa5g2356 196 SMART dnaj_3 60 120 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g2356 Psa-Chr5 182394317 182395262 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g2356 63 125 C2H2 Transcription Factor Family AT1G74250 40.909 3.50e-06 45.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g2356 - - gmx:100819682 169.088