Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g2352 ATGGTTTCAATCCTCAAATTCCGTAGAATCTTCTACACAATAGAAGCCACACGCAAAGAATCATATGGTGCTTTGAGACACTGTCATTCTGAGAAGCTATGTAGAGTAGGGCTTTTCTGGGATTTGGATAACAAACCACCCAATTCAATTCCACCCTATGAAGTTGCCAATAAGCTCAGAATAGCTGCAGCTTCCTTCGGGGTGTTCGCCATATGGTGGCTTATGCGAATAGCCACACTTTTAACCATGTTCCTCATGTTGTTCGGGAGAGTCGGAAAGAGAGGCAATTGTTGTATAGTTTGGAGAATAAGGTATAAGAAGGCTGCAAGGGCTGTTCTGACTCCTAAAGTTGGGTATGGTTTGGCTGATGAGCTGAAACGGGCAGGGTTTTGGGTTCAAACCGTGTTGGATAGGCCGCAAGCTGCAGATGTTGCGCTGCAAAAGCATATGGTGGATATGATGGATTCAACAGGCGGGTTGAGTGGCATGGTCCTTGTATCGGATGATTCTGATTTTGTTGATGTGATAAAGGAAGCAAAGTTGCGATGTCTCAAGACTGTTGTTATTGGGGAGGCTGTATCGGTTATGGAAAATTGGAAAGATCGTGATATATTGAAAAGGTTGGAGTGGACGTACAATCCAGGTGTGGATAAAAAGAAACTCAACATGGATGATGCAGATGCTGAAGCATCTGGAGATGATGATATTGAAGATATCTATGATGAAATTGATAATGACTACAATGATGACAAAGGTTCTTGGTGGAAATTAGATCCGATGATTAATGATGTTACAAATTGA 801 0.422 MVSILKFRRIFYTIEATRKESYGALRHCHSEKLCRVGLFWDLDNKPPNSIPPYEVANKLRIAAASFGVFAIWWLMRIATLLTMFLMLFGRVGKRGNCCIVWRIRYKKAARAVLTPKVGYGLADELKRAGFWVQTVLDRPQAADVALQKHMVDMMDSTGGLSGMVLVSDDSDFVDVIKEAKLRCLKTVVIGEAVSVMENWKDRDILKRLEWTYNPGVDKKKLNMDDADAEASGDDDIEDIYDEIDNDYNDDKGSWWKLDPMINDVTN* 267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g2352 266 Coils Coil 262 266 - -
Psa5g2352 266 Gene3D - 94 203 - -
Psa5g2352 266 PANTHER - 104 191 - -
Psa5g2352 266 PANTHER - 26 69 - -
Psa5g2352 266 PANTHER - 191 259 - -
Psa5g2352 266 Pfam NYN domain 36 190 IPR021139 GO:0004540
Psa5g2352 266 PANTHER ZINC FINGER (C2H2 TYPE) FAMILY PROTEIN 26 69 - -
Psa5g2352 266 PANTHER ZINC FINGER (C2H2 TYPE) FAMILY PROTEIN 104 191 - -
Psa5g2352 266 PANTHER ZINC FINGER (C2H2 TYPE) FAMILY PROTEIN 191 259 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g2352 Psa-Chr5 181942213 181943288 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g2352 35 71 C2H2 Transcription Factor Family AT4G12240 64.865 5.48e-10 57.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g2352 - - lja:Lj3g3v3326020.1 209.92